Report for Sequence Feature Glyma08g27760
Feature Type: gene_model
Chromosome: Gm08
Start: 22081833
stop: 22083398
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g27760
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G15780 AT
Annotation by Michelle Graham. TAIR10: Pollen Ole e 1 allergen and extensin family protein | chr5:5144898-5146297 REVERSE LENGTH=401
SoyBase E_val: 1.00E-48 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF01190 PFAM
Pollen proteins Ole e I like
JGI ISS
UniRef100_I1KWJ8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWJ8_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q2HSE9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pollen Ole e 1 allergen and extensin n=1 Tax=Medicago truncatula RepID=Q2HSE9_MEDTR
SoyBase E_val: 4.00E-91 ISS
Expression Patterns of Glyma08g27760
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g27760
Paralog Evidence Comments
Glyma18g50970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g27760 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g251500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g27760
Coding sequences of Glyma08g27760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g27760.1 sequence type=CDS gene model=Glyma08g27760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTTGGTTCCTTGTAATACTATTTCTCAGTCTCACATTTGGTACAACTCATTCTGAGACTAGTCACCACAAGAAACTTCCCTCTGCTGTTGTGGTTGGCACTGTTTACTGTGATACATGCTTCCAACAGGATTTCTCCATGGGAAACCACTTCATTTCAGGGGCATCAGTTGCTGTAGAATGCAAAGATGGATATGGGAGGTCAAAGCCAAGGTTTAGGAAAGAAGTGAAGACAGATGATCATGGGGAGTTCAAAGTGCAGTTGCCCTTCTCAGTGAGCAAACATGTGAAAAGAATAAAAGGATGCACTGTGAAATTAATAAATAGCAGTGAGCCTTATTGTGCTGTGGCCTCAGCAGCTACTTCTTCCTCACTGCGCCTCAAGTCCAGAAAGCAAGGACAACACATATTCTCAGCTGGCTTTTTCTCATTCAAGCCTCTTAGACAGCCAAATCTCTGCAACCAAAAACCAAGCATTCAAAACATCAAGGGCCTTGATTATGCGAAACACATATTTCCTCCAAAAATAGATCCATCGTTTCCTCCTCCACTTCAGGATCCAAAAACACCAGGTGGTCTTCTTCCTCCCATTCCTGGATTACCCGACCTCCCACCATTGTTGCCACCACTCCCTCTTTTGCCACCCCTTTCAGGAATATTGTCACCACTAGTCCCTGCAGGAATCACTAATGAGTTCCCAAATGTTCAGCCTTCAGATCAGAAACTAGTTGACCCTAATAACCTCATATTTCCTCCTAACCCATTTCAACCAACACCCTCAGTCCCCAACCCTCTTCAGCAACCTCCTCTAATTCCTAACCCATTAGAGCCATCAGGCCCATCACCACTTGTTCCTAACCCATTCCAGCCTCCCTCATCAGCAACATCACCACCACTGTTTCCATTCCCAACAGTGCCAGGTTTAACTCCATCTCCACCATCACTAGCTCTTCCCATTCCTTTTCCTCCATTATTCCCTCCACCTAGCAGCCCTGGCACACCCTCTGCTTCCTCTGCAAAGAATGCTTCTCCTTAA
Predicted protein sequences of Glyma08g27760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g27760.1 sequence type=predicted peptide gene model=Glyma08g27760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSWFLVILFLSLTFGTTHSETSHHKKLPSAVVVGTVYCDTCFQQDFSMGNHFISGASVAVECKDGYGRSKPRFRKEVKTDDHGEFKVQLPFSVSKHVKRIKGCTVKLINSSEPYCAVASAATSSSLRLKSRKQGQHIFSAGFFSFKPLRQPNLCNQKPSIQNIKGLDYAKHIFPPKIDPSFPPPLQDPKTPGGLLPPIPGLPDLPPLLPPLPLLPPLSGILSPLVPAGITNEFPNVQPSDQKLVDPNNLIFPPNPFQPTPSVPNPLQQPPLIPNPLEPSGPSPLVPNPFQPPSSATSPPLFPFPTVPGLTPSPPSLALPIPFPPLFPPPSSPGTPSASSAKNASP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
