Glyma08g27730 - SoyBase

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Report for Sequence Feature Glyma08g27730

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22050786
stop:	22055298
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38895	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:15572084-15573315 FORWARD LENGTH=221	SoyBase	E_val: 3.00E-97	ISS
GO:0000303	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to superoxide	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009743	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to carbohydrate stimulus	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22766	Panther	RING FINGER PROTEIN 24-RELATED	JGI		ISS
PTHR22766:SF20	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_B7FJQ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=B7FJQ8_MEDTR	SoyBase	E_val: 2.00E-133	ISS
UniRef100_I1KWJ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWJ4_SOYBN	SoyBase	E_val: 9.00E-167	ISS

Expression Patterns of Glyma08g27730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27730

Paralog	Evidence	Comments
Glyma18g50945	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g251300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g27730

Limit To All Plant Sequences

>Glyma08g27730.4   sequence type=transcript   gene model=Glyma08g27730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAGAGAAGAGGGAGGGAGAGAGAGAGAGTGAAATGTTTTGCTTCCTCTAATCTGGCGAATCATTCGTTCTAGCAAATTTTGCCGAAAACTCCAAAACCCTCTTTTAGTAAACTCGATTAACGACAATCTCAATCTTCTACAGCTTATCCTATATCTCTCTCTTTTCTTCTCTTCCCCCAACAACAATTTCAATCAAAACTCTCTCTCAGCTGAAAGGTAAATGATGATCCTTCTGCTGGTTGATGTACGAGCATAGCTTACCAGTGAAGTAACGAATCATTTTTGCCACAATTTGAAGGAACATTGCAAGCAGATTATAGCTTTCCCTTGGAACACTCAAATTTGTGATTAAGAGAATCAGAGTTTGCTTATCCATATAACAGATCACCCGAACAGAAGAGGGAGGGTACTGGTTTGCGGAGTCAATTGGACTTCTGCGAGCTTAGAATCCTCTCTCCTTTATTTATTAACGAAATCATAGTCATTAGTCTTGGCTAGTGCTGTTGGGGACTCTTTTTCACAAAGCGTGCATGTAACAGCATCCATGTTTTGGTGATCTTTGAGTTGAGAAGAGAGAAAAATTTAAGTTGAAAAAGTGAGGGATATTGAAGCTAAAACAATGGGTGCAGTTTGTTGCTGTTTCAATGTTGATGATTTTGAAGATTATATGAATCCAAATAGTTCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTGTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATTCAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGTTCACAGCGTGAAGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAATTCTGGTGGCAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATACCGTTCCAAGTCCTCTGTAAGACTCTCATCAGCAAAACTTACAACTGGAGCTGGGGTTGTCTATTCATCCTCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAGCTGTCCTGTTTGTGGGAAGGTGATGGTATTTGATGAAACGACTGATTGAAAAGGTTTATGTCGTGGATGATACCAACAACAGAGGAAAGGAAATATACAGTATAGACATTGTGAATACTTCAGATTAAGCGCTTATCATGTATAGTAAGTATATAACATTTTTATTAACCATCACTGTAAGTTCAATCTCATCCAAGTTGTTTCTATATTTATACTTTTCTCCCTTGCCAAAACATCCAAGATTAAAAAAAAAAAATGCCATTTTAGATGGCGACTTTGTCATGGTTTCAACAGTTTGCCATGTAATAGAATGATTTCCTCCCTCTTTTTACTTTTTGTTTTTATTTATGAGTTTGAATTTTGGAACC

>Glyma08g27730.5   sequence type=transcript   gene model=Glyma08g27730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCACCCACCCACCAAAAGAAGGGACATTAGAGAAGAGGGAGGGAGAGAGAGAGAGTGAAATGTTTTGCTTCCTCTAATCTGGCGAATCATTCGTTCTAGCAAATTTTGCCGAAAACTCCAAAACCCTCTTTTAGTAAACTCGATTAACGACAATCTCAATCTTCTACAGCTTATCCTATATCTCTCTCTTTTCTTCTCTTCCCCCAACAACAATTTCAATCAAAACTCTCTCTCAGGTGATTAAGAGAATCAGAGTTTGCTTATCCATATAACAGATCACCCGAACAGAAGAGGGAGGGTACTGGTTTGCGGAGTCAATTGGACTTCTGCGAGCTTAGAATCCTCTCTCCTTTATTTATTAACGAAATCATAGTCATTAGTCTTGGCTAGTGCTGTTGGGGACTCTTTTTCACAAAGCGTGCATGTAACAGCATCCATGTTTTGGTGATCTTTGAGTTGAGAAGAGAGAAAAATTTAAGTTGAAAAAGTGAGGGATATTGAAGCTAAAACAATGGGTGCAGTTTGTTGCTGTTTCAATGTTGATGATTTTGAAGATTATATGAATCCAAATAGTTCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTGTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATTCAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGTTCACAGCGTGAAGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAATTCTGGTGGCAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATACCGTTCCAAGTCCTCTGTAAGACTCTCATCAGCAAAACTTACAACTGGAGCTGGGGTTGTCTATTCATCCTCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAGCTGTCCTGTTTGTGGGAAGGTGATGGTATTTGATGAAACGACTGATTGAAAAGGTTTATGTCGTGGATGATACCAACAACAGAGGAAAGGAAATATACAGTATAGACATTGTGAATACTTCAGATTAAGCGCTTATCATGTATAGTAAGTATATAACATTTTTATTAACCATCACTGTAAGTTCAATCTCATCCAAGTTGTTTCTATATTTATACTTTTCTCCCTTGCCAAAACATCCAAGATTAAAAAAAAAAAATGCCATTTTAGATGGCGACTTTGTCATGGTTTCAACAGTTTGCCATGTAATAGAATGATTTCCTCCCTCTTTTTACTTTTTGTTTTTATTTATGAGTTTGAATTTTGGAACCACTCTTCCAAGGTTATTTCCCA

Coding sequences of Glyma08g27730

Limit To All Plant Sequences

>Glyma08g27730.3   sequence type=CDS   gene model=Glyma08g27730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCAGTTTGTTGCTGTTTCAATGTTGATGATTTTGAAGATTATATGAATCCAAATAGTTCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTGTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATTCAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGTTCACAGCGTGAAGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAATTCTGGTGGCAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATACCGTTCCAAGTCCTCTGTAAGACTCTCATCAGCAAAACTTACAACTGGAGCTGGGGTTGTCTATTCATCCTCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGGTAAGAGTGTTTTTTCTTTTTTTGGCCAATTTCAGAACTGTTGTAGGAGGATGTTAGGCAAGAGGAATCATCTACTGTAG

>Glyma08g27730.4   sequence type=CDS   gene model=Glyma08g27730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCAGTTTGTTGCTGTTTCAATGTTGATGATTTTGAAGATTATATGAATCCAAATAGTTCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTGTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATTCAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGTTCACAGCGTGAAGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAATTCTGGTGGCAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATACCGTTCCAAGTCCTCTGTAAGACTCTCATCAGCAAAACTTACAACTGGAGCTGGGGTTGTCTATTCATCCTCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAGCTGTCCTGTTTGTGGGAAGGTGATGGTATTTGATGAAACGACTGATTGA

>Glyma08g27730.5   sequence type=CDS   gene model=Glyma08g27730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCAGTTTGTTGCTGTTTCAATGTTGATGATTTTGAAGATTATATGAATCCAAATAGTTCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTGTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATTCAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGTTCACAGCGTGAAGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAATTCTGGTGGCAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATACCGTTCCAAGTCCTCTGTAAGACTCTCATCAGCAAAACTTACAACTGGAGCTGGGGTTGTCTATTCATCCTCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAGCTGTCCTGTTTGTGGGAAGGTGATGGTATTTGATGAAACGACTGATTGA

Predicted protein sequences of Glyma08g27730

Limit To All Plant Sequences

>Glyma08g27730.3   sequence type=predicted peptide   gene model=Glyma08g27730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAVCCCFNVDDFEDYMNPNSSVYRNCMCLSCFVQNFLTVYESIFRRGEVHAIPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRFFRSQREGLVSRREKGSSHLNEESEPLRGDVDADSESLNSGGKWNDTSEDGSKEYRSKSSVRLSSAKLTTGAGVVYSSSEEEDVCPTCLEGKSVFSFFGQFQNCCRRMLGKRNHLL*

>Glyma08g27730.4   sequence type=predicted peptide   gene model=Glyma08g27730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAVCCCFNVDDFEDYMNPNSSVYRNCMCLSCFVQNFLTVYESIFRRGEVHAIPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRFFRSQREGLVSRREKGSSHLNEESEPLRGDVDADSESLNSGGKWNDTSEDGSKEYRSKSSVRLSSAKLTTGAGVVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDSCPVCGKVMVFDETTD*

>Glyma08g27730.5   sequence type=predicted peptide   gene model=Glyma08g27730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAVCCCFNVDDFEDYMNPNSSVYRNCMCLSCFVQNFLTVYESIFRRGEVHAIPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRFFRSQREGLVSRREKGSSHLNEESEPLRGDVDADSESLNSGGKWNDTSEDGSKEYRSKSSVRLSSAKLTTGAGVVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDSCPVCGKVMVFDETTD*

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