Glyma08g27700 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g27700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	22032869
stop:	22038147
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02300	AT	Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family protein \| chr3:461551-463929 FORWARD LENGTH=471	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding	SoyBase	N/A	ISS
KOG1427	KOG	Uncharacterized conserved protein, contains RCC1 domain	JGI		ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF101	Panther	REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY	JGI		ISS
PF00415	PFAM	Regulator of chromosome condensation (RCC1) repeat	JGI		ISS
UniRef100_G7KR17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RCC1 and BTB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KR17_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KWJ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWJ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g27700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27700

Paralog	Evidence	Comments
Glyma18g50920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g250900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g27700

Limit To All Plant Sequences

>Glyma08g27700.1   sequence type=CDS   gene model=Glyma08g27700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATTGATGCAATTTTTGGGACTATTCGGCCCGTGAGTGTTCCAAGGAAGAGTGCCATTTATGTGTGGGGGTACAATCAATCAGGGCAGACAGGTAGAAAGGGGAAAGAGGATCAGTTGAGGATTCCCAAACAGCTTCCTCCTGAGCTGTTTGGATGTCCGGCTGGCACCAATGCATGTTGGTTGGATGTTGCCTGTGGTCGCGAGCACACGGCTGCGATAGCCTCTGATGGCTCACTCTTCACTTGGGGGGCTAATGACTTTGGTCAATTGGGTGATGGAACTGAAGAGCGAAGGAAACATCCAGAAAAAGTAAAGCAATTAGAGTCAGAGTTTGTAAAATCTGTATCCTGTGGAGCACATTGCTCTGCTTGCATTGCTGAACCTCGTGAAAATGATGGTTCCATCTCCACGAGAAGGCTCTGGGTGTGGGGGCAAAATCAGGGATCGAATCTTCCAAGGTTGTTCTGGGGGGCCTTCAAACCTAATACAATTATTCGTGAAGTGTCTTGTGGAGCTGTCCATGTGGTTGCTTTGTCTGATGAAGGCCTACTACAAGCTTGGGGCTACAATGAATGTGGTCAACTTGGCCGAGGTGTTACTTGTGAAGGACTACAGGGGGCTCATATTATAAGTTCTTATGCTAAATTCCTTGATGAAGCCCCAGAACTTGTGAAGATTGCCAAAGTGTCATGCGGGGAGTACCACACAGCAGCCATTTCTGATAAGGGCGAGGTCTACACATGGGGGCTAGGAAATATGGGCCAGCTTGGGCATTCTTCACTCCAGTATGGGGATAAAGAGTTACTGCCAAGGCGGGTGGTTACCCTTGATGGTATTTTCATAAAGGATGTGGCGTGTGGTGGTGTACACACATGTGCTTTAACTCAGGGAGGAGCACTTTATACCTGGGGTGGTGGTCAGTCTGGGCAGCTAGGGCTTGGCCCCCAAACTGGATTATTCTCTTGTGTTGCTAATGACTCTCAGACATTTTTCCGAAACATTCCAGTTTTAGTTGTTCCTAAAGGTGTGCAACTTGTTGCATGTGGGCATTCTCACACTCTTATCTCTATGAGTGATGGTCGAATTCATGGATGGGGTTACAATAATTATGGTCAGGCAGCCAATGAGAAATGTACATATGCTTGGTATCCATCACCAGTTGACTGGTGTGTTGGGGAGGTTAGGAAACTAGCTGCTGGTGGTGGCCATTCAGCTGTGTTGACTGACGCTTGTTCGTTAAAGGAGTTATGTGAGTTTGTACTTGCAGACAGTATGACTTTATCTAACGCTGCTAAGGTTGAGGATATTGCATATAGAACTGGATCAGATGCTTTGGTGCGCCTTTGTGGAAGACTCAGAGAGTATATGCTTGCTGGTGGAGCTCTAGAACAAAAGGAGGAGATGAACAGTAAAATCTGA

Predicted protein sequences of Glyma08g27700

Limit To All Plant Sequences

>Glyma08g27700.1   sequence type=predicted peptide   gene model=Glyma08g27700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIDAIFGTIRPVSVPRKSAIYVWGYNQSGQTGRKGKEDQLRIPKQLPPELFGCPAGTNACWLDVACGREHTAAIASDGSLFTWGANDFGQLGDGTEERRKHPEKVKQLESEFVKSVSCGAHCSACIAEPRENDGSISTRRLWVWGQNQGSNLPRLFWGAFKPNTIIREVSCGAVHVVALSDEGLLQAWGYNECGQLGRGVTCEGLQGAHIISSYAKFLDEAPELVKIAKVSCGEYHTAAISDKGEVYTWGLGNMGQLGHSSLQYGDKELLPRRVVTLDGIFIKDVACGGVHTCALTQGGALYTWGGGQSGQLGLGPQTGLFSCVANDSQTFFRNIPVLVVPKGVQLVACGHSHTLISMSDGRIHGWGYNNYGQAANEKCTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFVLADSMTLSNAAKVEDIAYRTGSDALVRLCGRLREYMLAGGALEQKEEMNSKI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain