Glyma08g27620 - SoyBase

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Report for Sequence Feature Glyma08g27620

Feature Type:	gene_model
Chromosome:	Gm08
Start:	21928828
stop:	21930321
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29970	AT	Annotation by Michelle Graham. TAIR10: B12D protein \| chr3:11745299-11746481 FORWARD LENGTH=87	SoyBase	E_val: 9.00E-40	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06522	PFAM	B12D protein	JGI		ISS
UniRef100_C6T3V7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3V7_SOYBN	SoyBase	E_val: 3.00E-57	ISS
UniRef100_Q69F92	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: B12D-like protein n=1 Tax=Phaseolus vulgaris RepID=Q69F92_PHAVU	SoyBase	E_val: 2.00E-51	ISS

Expression Patterns of Glyma08g27620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27620

Paralog	Evidence	Comments
Glyma18g50800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g250300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g27620

Limit To All Plant Sequences

>Glyma08g27620.1   sequence type=CDS   gene model=Glyma08g27620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCGTTGGATGAAACCAGAGGTTTACCCTCTATTGGCTGCAATGACCTTTGTTACCGGCATGTGTGTGTTCCAACTAACAAGAAATGTGCTCGGGAACCCTGATGTTAGGATTAACAAAACTCGGAGAAGCATGGCAGTGTTGGAGAACAGAGAAGAGGGAGAGAAATATGCTGAGCATGGCCTGAGGAAGTTCCTTCGTACTCGACCACCAGAGATTATGCCAACCATCAACCACTTCTTCAGCGAGGATAAATGA

Predicted protein sequences of Glyma08g27620

Limit To All Plant Sequences

>Glyma08g27620.1   sequence type=predicted peptide   gene model=Glyma08g27620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRWMKPEVYPLLAAMTFVTGMCVFQLTRNVLGNPDVRINKTRRSMAVLENREEGEKYAEHGLRKFLRTRPPEIMPTINHFFSEDK*

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