Glyma08g27600 - SoyBase

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Report for Sequence Feature Glyma08g27600

Feature Type:	gene_model
Chromosome:	Gm08
Start:	21894875
stop:	21899068
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G30180	AT	Annotation by Michelle Graham. TAIR10: brassinosteroid-6-oxidase 2 \| chr3:11810867-11813509 FORWARD LENGTH=465	SoyBase	E_val: 0	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004497	GO-mf	Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0157	KOG	Cytochrome P450 CYP4/CYP19/CYP26 subfamilies	JGI		ISS
PTHR24286	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24286:SF21	Panther		JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_I1KWI2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KWI2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q69F95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 85A n=1 Tax=Phaseolus vulgaris RepID=C85A_PHAVU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g27600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27600

Paralog	Evidence	Comments
Glyma18g50790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g250000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g27600

Limit To All Plant Sequences

>Glyma08g27600.1   sequence type=CDS   gene model=Glyma08g27600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGTTCATAGTGGTTCTTGTTGTTGTTGCCTTGGTGCTCTGTTTTTGCACTGCTCTCTTGAAGTGGAATGAAGTGAGGTATAGGAGGAAAGGTTTGCCTCAAGGCACAATGGGGTGGCCTGTTTTTGGGGAGACAACTGAATTTCTTAAGCAAGGTCCAAACTTCATGAAGAACAAGAGAGCAAGGTATGGCAGTTTTTTCAAATCCCACATCCTGGGGTGTCCTACCATTGTATCCATGGATCCAGAGCTTAATAGATACATACTCATGAATGAAGCAAAAGGGCTTGTTCCAGGGTACCCACAATCCATGTTAGATATTTTAGGCACACGCAATATTGCAGCCGTTCATGGCTCCACTCACAAGTACATGAGAGGAGCACTTCTTTCAATCATTAGCCCCACCTTGATCAGAGACCTGCTTTTACCAAAAATTGATGAGTTCATGAGAACCCACTTGAGTGATTGGGAGAACAAAGTCATTAACATCCAAGAGAAAACTAAAGAGATGGCATTTCTCTCTTCCCTGAAGCAGATTTCTGGTATGGAATCCAGCTCAATTTCTCAACCCTTCATGACCGAGTTTTTTAAACTAGTTTTAGGAACTCTATCTTTGCCTATTAACCTTCCTGGCACAAATTATTGCCGTGGATTGCAGGCAAGAAAGAGTATTATCAGCATTCTTAGTCAGCTGCTAGAGGAAAGGAAATTATCTCAAGAAGCCCACGTAGACATGCTTGGTTGCTTGATGAATAGAGAGGAAAATCGATACAAACTAACTGATGAGGAAATCATTGATCTAATTATTACAATTATGTATTCTGGTTATGAAACTGTTTCAACTACATCAATGATGGCACTAAAGTATCTCCATGACCATCCCAAAGTTCTTGAAGAAATAAGAAAAGAGCATTTTGCCATCAGGGAAAGGAAAAAGCCAGAGGATCCAATTGATGGTAATGATCTCAAATCAATGAGGTTTACTCGTGCGGTGATTTTTGAGACCTCGAGATTAGCTACAACAGTTAATGGGGTTCTAAGAAAAACAACTCATGACATGGAACTAAACGGCTATTTGATTCCTAAAGGGTGGAGGATATATGTATATACGAGAGAGATCAATTATGATCCATTTCTGTATCATGATCCACTAGCATTCAACCCATGGAGATGGCTGGGTAACAGTCTAGAGTCACAAAGCCACTTCTTGATATTTGGAGGAGGGACCAGACAATGTCCTGGGAAGGAGTTGGGGATAGCAGAAATTTCCACTTTCTTACACTACTTTGTAACTAGATACAGGTGGGAAGAAGTAGGAGGAGGTAAACTAATGAAATTCCCTAGAGTTGTGGCACCAAATGGACTGCACATAAGGGTCTCGCCTTACTAA

Predicted protein sequences of Glyma08g27600

Limit To All Plant Sequences

>Glyma08g27600.1   sequence type=predicted peptide   gene model=Glyma08g27600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALFIVVLVVVALVLCFCTALLKWNEVRYRRKGLPQGTMGWPVFGETTEFLKQGPNFMKNKRARYGSFFKSHILGCPTIVSMDPELNRYILMNEAKGLVPGYPQSMLDILGTRNIAAVHGSTHKYMRGALLSIISPTLIRDLLLPKIDEFMRTHLSDWENKVINIQEKTKEMAFLSSLKQISGMESSSISQPFMTEFFKLVLGTLSLPINLPGTNYCRGLQARKSIISILSQLLEERKLSQEAHVDMLGCLMNREENRYKLTDEEIIDLIITIMYSGYETVSTTSMMALKYLHDHPKVLEEIRKEHFAIRERKKPEDPIDGNDLKSMRFTRAVIFETSRLATTVNGVLRKTTHDMELNGYLIPKGWRIYVYTREINYDPFLYHDPLAFNPWRWLGNSLESQSHFLIFGGGTRQCPGKELGIAEISTFLHYFVTRYRWEEVGGGKLMKFPRVVAPNGLHIRVSPY*

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