Glyma08g27260 - SoyBase

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Report for Sequence Feature Glyma08g27260

Feature Type:	gene_model
Chromosome:	Gm08
Start:	21598662
stop:	21600180
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35150	AT	Annotation by Michelle Graham. TAIR10: O-methyltransferase family protein \| chr4:16726948-16728531 REVERSE LENGTH=325	SoyBase	E_val: 2.00E-55	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: O-methyltransferase activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
KOG3178	KOG	Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases	JGI		ISS
PTHR11746	Panther	O-METHYLTRANSFERASE	JGI		ISS
PF00891	PFAM	O-methyltransferase	JGI		ISS
PF08100	PFAM	Dimerisation domain	JGI		ISS
UniRef100_I1KWG9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWG9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q84KK5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoflavone 7-O-methyltransferase n=1 Tax=Glycyrrhiza echinata RepID=D7OMT_GLYEC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g27260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27260

Paralog	Evidence	Comments
Glyma18g50470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g248000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g27260

Limit To All Plant Sequences

>Glyma08g27260.1   sequence type=CDS   gene model=Glyma08g27260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTAGCAATGGCCGAAAAGCAAGTGAGATCTTTCAAGGCCAAGCTCTCATATACAGACACATGTTTGCCTTCATAGATTCTATGTGCCTCAAAACGATTATTGAGCTTGGAATACCAGACATAATCCACAAGCACGGCCAACCCATTACTCTTTCTGAGTTGGTGTCAATTCTACATGTTCCACCAGCTAGAGTAGGTCACGTTCAGAGCCTCATGCACTACCTGTCACACCATAGATTCTTTGAAAGTGTAAGAATCCATGAAAAAGAAGCATATGCTCTCACTGCTGCTTCAGAGCTACTTGTAAAAAGCAGTGAACTTTCTTTAGCTCCAATGGTTGAGTACATCCTTGATCCAACTCTATCAGCTTCATTCCATCAAATGAAAAAGTGGGTTTATGAGGAAGATCTCTCAGTATTTGATATCTCCTTAGGGTGTAGTTTATGGGATTTTCTTAACAAAAACCCTGCATACAACGAGTCATTCAATGAGGCAATGGCTAGAGATTCTCAAATGAGTAATTTGGCATTGAGAGATTGCAAGTTGGTGTTTGAGGGACTGGAATCCATTGTGGATGTTGGTGGTGGAACTGGAGCCACTGCCAGGATGATCTCTGAAGCATTTCCTGACTTGAAATGCGTTGTGCTTGACCGTCCTCACGTTCTGGAGAACTTGTCCGAAAGCAACAATTTGACATATGTTGGTGGGGACATGTTCAAATCTATTCCTAAGGCTGATGCAGTTCTGCTTAAGTGGATTCTTCATGATTGGACTGATAAAGACTGCATAAAGATATTAGAGAATTGTAAAGAAGCTATTTCTTCAAATAATGGCAAAAGAGGAAAAATAATCGTCATAGATATGGTGATACAAGAAAAGCAAGATGAGCATAAAGTTACAGAACTAAAGCTCCTTTGGGATGTAGCCATGGCATGTGTATTAAATGGAAAAGAGAGAAATGAAGAAGAATGGAAGAAACTCTTCATGGAAGCAGGGTTCCAAGACTACAAAATATCTCCCTTGACCGGGTTTCTGTCTCTTATTGAGATCTATCCTTAG

Predicted protein sequences of Glyma08g27260

Limit To All Plant Sequences

>Glyma08g27260.1   sequence type=predicted peptide   gene model=Glyma08g27260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSNGRKASEIFQGQALIYRHMFAFIDSMCLKTIIELGIPDIIHKHGQPITLSELVSILHVPPARVGHVQSLMHYLSHHRFFESVRIHEKEAYALTAASELLVKSSELSLAPMVEYILDPTLSASFHQMKKWVYEEDLSVFDISLGCSLWDFLNKNPAYNESFNEAMARDSQMSNLALRDCKLVFEGLESIVDVGGGTGATARMISEAFPDLKCVVLDRPHVLENLSESNNLTYVGGDMFKSIPKADAVLLKWILHDWTDKDCIKILENCKEAISSNNGKRGKIIVIDMVIQEKQDEHKVTELKLLWDVAMACVLNGKERNEEEWKKLFMEAGFQDYKISPLTGFLSLIEIYP*

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