Report for Sequence Feature Glyma08g27250
Feature Type: gene_model
Chromosome: Gm08
Start: 21590328
stop: 21593797
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g27250
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G59780 AT
Annotation by Michelle Graham. TAIR10: NB-ARC domain-containing disease resistance protein | chr1:21993581-21997691 REVERSE LENGTH=906
SoyBase E_val: 2.00E-107 ISS
GO:0006952 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0043531 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ADP binding
SoyBase N/A ISS
KOG4658
KOG
Apoptotic ATPase
JGI ISS
PTHR23155 Panther
LEUCINE-RICH REPEAT-CONTAINING PROTEIN
JGI ISS
PTHR23155:SF121 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00931 PFAM
NB-ARC domain
JGI ISS
UniRef100_B9S717 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein RPP13, putative n=1 Tax=Ricinus communis RepID=B9S717_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1KWG8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWG8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g27250
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g27250
Paralog Evidence Comments
Glyma18g50460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g27250 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g247900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g27250
Coding sequences of Glyma08g27250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g27250.2 sequence type=CDS gene model=Glyma08g27250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTGAGGCAGTTGTGTCCTTTGCAGTTGAAAGGCTTCACAACCTACCGACGGAAGAGGCCAGATTGTTAACTGGGGTGAGTGACAAAGCCAAAAGCATGCAAAATGAACTGAAGAGGATGCAATGCTTCCTAAGAGATGCTGAGAGAAAGAAGGATAAAAATGATACTATAAAGAATTATATTTCAGAGGTGGGAAAACTAGCCTATGATGCAGAGGATGTGATTGAAATATATGCTATTAAGGTTGCATTAGGCATAAATGACCTCACAAGAAACTTACAAACCTATGGTTTGACTGCAATAGAAGACGGTGAAGAGGCATCTGAGGTGCAAAGACAATTGAGAAGGTCTTATTCTCACATAGTTGAAGAGTTCATTGTTGGCTTAGATAAGGACACAGACAAAGTGCAATGCAAGAAAAGAGACGTTTGGGAGGGAATTTTACTGAAGCTTATTTCTCCTACCAAAGAGGAAAGGGATGGGATTACGAAGATGAAAGATGATGAACTGGCAAGGAAGTTGTTTAAAGTTCAGCAAGATAAAAAATGTTTGATCATCCTGGATGACATATGGAGCAATGAGGCATGGGACATTCTAAGTCCTGCTTTTCCATCACAAAATACAAGGTGTAAGATAGTTTTTACATCCCACAATAAAGACATTTCATTGCATGTAGATCCTGAAGGCTTGCTCCACGAACCAAAATCCACGGTTTCTGATGAGTTTATAAGATTAGGCAGAGAAATGGTTGCAAAGTGTGCTGGTCTGCCTTTGACTATCATTGTTCTTGGAGGGCTTTTGGCTACAAAGGAGAGAGTTAGTGACTGGGATACAATAGGAGGAGAGACTGAGATTCCAAGAACTAAACTAATTCAGTTATGGGTAGCAGAAGGTGTTGTTTCTCTTCAATATGAGACTAAATGGGACGAGGCAATGGAGGATGTTGCTGAATGCTACCTGGGTAACTTAATCAGCCGCTGCATGGTTCAAGTTGGTCAGATGGGGTCTACTGGTAGGATTAAAACCTGTCGGCTCCATGATTTAATGTGTGATCTGTATGCAAGACGAATTGATGAAGTTCGTAGGCTTGCTGTCTTCTTGGATCAACATGCTGATCAATTGATTCCACAGGACAAGCAAGTGAATGAACACCTCAGATCCCTTGTGTTTTTTAATGATAAGAAGTGTGTTTTTGTGAAGTTCAAATTATTTCAAGTTCTAGATCTTGAGGGAATTAAGGGGGTGAAGGGACAGTCATTGCCTAAAGAAGTGGGAAATCTTTTATGGTTGAAGTTTCTGAGTCTAAAAAGGACTCGCATACAGATACTGCCATCTTCCTTGGGCAATTTGGATAATTTGCAATTCCTAAATTTGCAAACTGTCAATAAAGTAACCGTGGAAATTCCAAATGTAATATGTAAGTTGAAACGGTTGAGGCATCTATATCTTCCAAATTGGTGTGGGAATGCTACTAACAACCTGCAACTGGAAAATCTGGCCAATTTACAGACAATAGTAAATTTTCTTGCCTGCAAATGTGATGTAAAAGATCTATTGAAGTTGAAAAAACTCAGAAAGCTAGTACTGAAGGACCCAAGACATTTTCAAAAGTTTAGTGAAAGTTTCAGTCCCCCTAATAAAAGGTTGGATTGCCTTTTATCCTTGTCTTTAAGGACTGACATGCTTTCCTTCCCTGAAAATGTTGTAGATGTTGAAAAATTGGTGCTAGGCTGTCCTTCCCTTCGAAAATTGCAGGTCGAAGGGTGGATGGAAAGGCTGCCAGCAGCCTCACTGTTTCCTCCACAGCTTTCAAAGTTGACTCTATGGGGATGTAGACTTGTGCAAGACCCATTGTTAACATTAGAGAAGCTTCTTAACTTGAAGTTTCTAAATGGGTGGGATATGTTTGTCGGAAAGAAAATGGCATGCTCACCAAATGGTTTTCCTCAACTAAAGGTTCTAGTACTTCGTGGCTTACCTAATTTAGATCAGTGGACTATAGAGGACCAAGCCATGCCTAATCTTTACCGATTGAGTATATCCGATTGCAACAATTTAAAGACAGTTCCTGATGGACTAAAATTTATCACTAGTCTTCGGGAGCTGGAAATCAGATGGATGCCTAAATCATTCAAGACCAGGCTTGGAACTGCTGGAGAGGATTACCACAAAGTCCAACATGTGCCATCGATTGTATTTTTGAACTAA
Predicted protein sequences of Glyma08g27250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g27250.2 sequence type=predicted peptide gene model=Glyma08g27250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVEAVVSFAVERLHNLPTEEARLLTGVSDKAKSMQNELKRMQCFLRDAERKKDKNDTIKNYISEVGKLAYDAEDVIEIYAIKVALGINDLTRNLQTYGLTAIEDGEEASEVQRQLRRSYSHIVEEFIVGLDKDTDKVQCKKRDVWEGILLKLISPTKEERDGITKMKDDELARKLFKVQQDKKCLIILDDIWSNEAWDILSPAFPSQNTRCKIVFTSHNKDISLHVDPEGLLHEPKSTVSDEFIRLGREMVAKCAGLPLTIIVLGGLLATKERVSDWDTIGGETEIPRTKLIQLWVAEGVVSLQYETKWDEAMEDVAECYLGNLISRCMVQVGQMGSTGRIKTCRLHDLMCDLYARRIDEVRRLAVFLDQHADQLIPQDKQVNEHLRSLVFFNDKKCVFVKFKLFQVLDLEGIKGVKGQSLPKEVGNLLWLKFLSLKRTRIQILPSSLGNLDNLQFLNLQTVNKVTVEIPNVICKLKRLRHLYLPNWCGNATNNLQLENLANLQTIVNFLACKCDVKDLLKLKKLRKLVLKDPRHFQKFSESFSPPNKRLDCLLSLSLRTDMLSFPENVVDVEKLVLGCPSLRKLQVEGWMERLPAASLFPPQLSKLTLWGCRLVQDPLLTLEKLLNLKFLNGWDMFVGKKMACSPNGFPQLKVLVLRGLPNLDQWTIEDQAMPNLYRLSISDCNNLKTVPDGLKFITSLRELEIRWMPKSFKTRLGTAGEDYHKVQHVPSIVFLN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
