Glyma08g27180 - SoyBase

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Report for Sequence Feature Glyma08g27180

Feature Type:	gene_model
Chromosome:	Gm08
Start:	21474489
stop:	21476614
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02160	AT	Annotation by Michelle Graham. TAIR10: Bromodomain transcription factor \| chr3:394615-395808 FORWARD LENGTH=397	SoyBase	E_val: 7.00E-67	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG2389	KOG	Predicted bromodomain transcription factor	JGI		ISS
PTHR23307	Panther	TBP-ASSOCIATED FACTOR TAF (TBN PROTEIN)	JGI		ISS
PF07524	PFAM	Bromodomain associated	JGI		ISS
PF10406	PFAM	Transcription factor TFIID complex subunit 8 C-term	JGI		ISS
UniRef100_B9SNR2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tbp-associated factor taf, putative n=1 Tax=Ricinus communis RepID=B9SNR2_RICCO	SoyBase	E_val: 2.00E-120	ISS
UniRef100_I1KWG4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWG4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g27180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27180

Paralog	Evidence	Comments
Glyma18g50380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g247400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g27180

Limit To All Plant Sequences

>Glyma08g27180.1   sequence type=CDS   gene model=Glyma08g27180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAATGGCGGTGGGAAGACTGGAAGACAGCTTGAACAGCCTGGCACATGGGGGAGGAGGAAAGTTGGTGGTGGTGATGACTATGCCCGGGCGATAGCGAAGATTGCGGTAGCACAGGTGTGCGAAAGCGAGGGATTTCAGGCGTTTCAGCAGTCAGCTCTTGAGGCGCTGTCTGACGTTGTGGCTCGGTATATTTTGAACGTTGGGAAGTCTGCACATTGCCATGCTAATCTTTCAGGTAGAACTGAGTGCCATGCTTTTGATGTCATTCAAGGGTTGGAAGATATGGGATCAGTGCAGGGGTTTGCGGGTGCTTCAGATGTTGATCACTGCCTTGAAAGTTCAGGTGTTATTCGGGAAATTGTTCATTTTGTTAATGATGCTGAACCGGTTATGTTTGCACACCCCATTCCTCAGTTTCCAGTTGTGAAAGAACGGGTGCCTAATCCAAGCTTTTTGCAAAAAGGAGAAGAGCCTCCTGGGGAGCATATTCCTGCTTGGTTGCCTGCGTTCCCTGATCTACAAACTTATTCAGAGTCACCGGTAGTGAATGGAAGAGGGACAGAACCTCGTGCAGTCAAATTTGACCAAGAAAGAGAGAATGGCAAAGGGGAGTGGCCTGCAATGAATTTCCAGCAGCAGATGGTCTCAAATATGTTTGAAAAGTCTGCCTTGATTGACCCTGCAGATGCTAAGGCAAAAAGAGTAGCAGCAGAAGGTAACCCGTTCCTTGCTGCACCTTTGAAAATTGAGGACAAGGAAGTTGCTTCTGTTCCCCCTCCGGCTAAGCTTTTTAATGATGTAGCTCTTGATAATCCTGTTGTGGAAAATTTTGTTGAAAATGAACCGATTTCAGCAATGGAGACATTTGCTCCAGCAATTGAAGCGATGAAAAGCACATGCTGTGATTCCAACGAAGATCAGACAAAATTTCGTGCAAATGAGAAGCCTACAGTGCGTTTTAAGATTGGGATTAAAAACAAATTATTAGGGAAGTCCATTGGTTTGATCCCACAAAAAGAGGAGCATAAAAATACTTTGCCCTGGTTTGCAATGGAAGATGGGAAGGATGACAGGAAAAGAAGGGCTGAGAAAATTCTAAGGGAATCTTTGGAAAACCCAGATCAGCTTGTTCAGTTGTAA

Predicted protein sequences of Glyma08g27180

Limit To All Plant Sequences

>Glyma08g27180.1   sequence type=predicted peptide   gene model=Glyma08g27180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNGGGKTGRQLEQPGTWGRRKVGGGDDYARAIAKIAVAQVCESEGFQAFQQSALEALSDVVARYILNVGKSAHCHANLSGRTECHAFDVIQGLEDMGSVQGFAGASDVDHCLESSGVIREIVHFVNDAEPVMFAHPIPQFPVVKERVPNPSFLQKGEEPPGEHIPAWLPAFPDLQTYSESPVVNGRGTEPRAVKFDQERENGKGEWPAMNFQQQMVSNMFEKSALIDPADAKAKRVAAEGNPFLAAPLKIEDKEVASVPPPAKLFNDVALDNPVVENFVENEPISAMETFAPAIEAMKSTCCDSNEDQTKFRANEKPTVRFKIGIKNKLLGKSIGLIPQKEEHKNTLPWFAMEDGKDDRKRRAEKILRESLENPDQLVQL*

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