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Report for Sequence Feature Glyma08g27155

Feature Type:gene_model
Chromosome:Gm08
Start:21458848
stop:21461405
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g27155
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02150AT Annotation by Michelle Graham. TAIR10: plastid transcription factor 1 | chr3:391522-392450 FORWARD LENGTH=278 SoyBaseE_val: 2.00E-45ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009694GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0045962GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of development, heterochronic SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF03634PFAM TCP family transcription factor JGI ISS
UniRef100_B9SNR1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SNR1_RICCO SoyBaseE_val: 2.00E-77ISS
UniRef100_UPI000233922EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233922E related cluster n=1 Tax=unknown RepID=UPI000233922E SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g27155
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g27155 not represented in the dataset
Glyma08g27155 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27155
ParalogEvidenceComments
Glyma18g50371 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27155 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g247300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g27155
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g27155
>Glyma08g27155.1   sequence type=CDS   gene model=Glyma08g27155   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTAAGAGCCAAAAAGAAGCAGATTTTCAATTAAAACAGGAGGGTCTTTCTCAATCAATTAATGATCCTGAAAAGGCAAAGGCTACATCAAGCTCAGTAGCACAATGGCCAAGATTGAAGGATCCAAGGATTGTTCGAGTATCCAGAGCCTTTGGAGGAAAAGACAGGCATAGCAAGGTTTGCACTATAAGAGGGTTAAGAGACAGACGGGTGAGGCTATCAGTACCAACTGCCATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCTAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCTAAGCATGAAATTGATGAACTTCCACCACTTCCCATTATTCCTTCAGTGAATAACTTCACCCTTGGTTATCCATCTGCTGTTACTTCTAATGAAGCTACCACCTCAAATTCTCAGCCTAATGAGCAACTTCTTAATATCAACAGAAGCATTCAATGGGAAGATTCAAACCATAATTCTACATGGAAATTAAAGGCTAAAGAAGTTTCAGGAGAAATGGTTAGCACTGATAAACCAAATTGGATAAGTAGAAGTCAAGAGGATAAGCAAGGAAGCAATAATCAAGGACCTAGCACACATGTTATACCAAATATTAATCTCTTACCAAGAGCAAATCTTAATCATCCTTCATTCTTGGGCTTGCTGAATACTATGCCACATGGTTACCGATGGGAACATTCTGCTGGTGATGTTTCTCATCCGTTGGGCAACAATGAATTATCAAACCTAACAGATATACACAACAATATTAACGTTGTACCTTTCCCAACATCATCATTGTCTTTATCAACTGGGAATTCTCAAATTATGCTATGTCCTCCAGGAGCAACGCAACCATATTTCCCTTCACATGTTACAGCAATGGACATGGATCCGAGGCAAATCAACCACTATCAGATGTTGAGTTCAGGTTCTGAAAATCCATTGGCGAATTCTCTCAATCATTCTTTCAGCCTGGCTATGATGGCTCATAAACCTCTTCTTTCACCCAACAGCAGCAAGAGCCCCTCTCACAAAGACCAAGATTTTCCTTAA
Predicted protein sequences of Glyma08g27155
>Glyma08g27155.1   sequence type=predicted peptide   gene model=Glyma08g27155   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKSQKEADFQLKQEGLSQSINDPEKAKATSSSVAQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIIPSVNNFTLGYPSAVTSNEATTSNSQPNEQLLNINRSIQWEDSNHNSTWKLKAKEVSGEMVSTDKPNWISRSQEDKQGSNNQGPSTHVIPNINLLPRANLNHPSFLGLLNTMPHGYRWEHSAGDVSHPLGNNELSNLTDIHNNINVVPFPTSSLSLSTGNSQIMLCPPGATQPYFPSHVTAMDMDPRQINHYQMLSSGSENPLANSLNHSFSLAMMAHKPLLSPNSSKSPSHKDQDFP*






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