Glyma08g27120 - SoyBase

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Report for Sequence Feature Glyma08g27120

Feature Type:	gene_model
Chromosome:	Gm08
Start:	21442353
stop:	21443780
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39090	AT	Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein \| chr5:15643612-15644958 FORWARD LENGTH=448	SoyBase	E_val: 6.00E-83	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_G7JQT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoflavonoid malonyl transferase n=2 Tax=Medicago truncatula RepID=G7JQT5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KWG1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KWG1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g27120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27120

Paralog	Evidence	Comments
Glyma18g50330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g247100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g27120

Limit To All Plant Sequences

>Glyma08g27120.1   sequence type=CDS   gene model=Glyma08g27120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTCACAACATCAAAATCCAGTACCACTCAAGGGTTTCCCCTCCCTCAGCAACACAAACATCACTCTCTCTTACTTTCTTCGATCTTTTCTGGCTCAGGTTCCACCCCGTGGAACGCATCTTCTTCTACACCCTCCCTACACCCCAATCAAACCCATCCATTTTCTATTCCAAAATCGTTCCAAAGCTCAAAACCTCTCTCTCTCACACCCTCCAACACTTTCCCCCTCTCGCCGGCAACGTCGTTTGGCCTAATGATTCCCCAAACCCCATCGTTCAATACACTCCAGGCAACTCCGTTTCATTTGTGGTAGCAGAATCCGAAGCTGATTTCAACCACGTGCTTGATAACTCACCCCACCAAGCATCGGAAGGATTCAGCATAGGAATCAGCACCCACCATTCCGTTCTTGATGGTAAATCTTCAACTCTTTTCATCAAAGCTTGGTCTTCTTTATGCCAAACCAACGATGATGAGTCTTCAGAGTCATCATCACCATCTTTGGCACCAAAGTTGGTTCCTTTCTTTAACAGATCAGTCATCAGAACCCCAAGGGAGTTGGGACTTAACTTCCCAACCAATTGGACCGAGGCCTTAACCAAATTGTTCCCTACTGGAAACAGCGACGGGAGATGCTTGAAGCTACTACCTTTCCCTCCAAGACTCGAGGATGAGGTTCGAGCCAGGTTCGTGCTCACAGGAGCAGATTTGGAGAAGTTAAGGAAAGGTGTCTTGTCCAAATGGGACATCGTTGAAAGAGGAACAGAATCAGAGGCACCTAGGTTGTCGTCCTTTGTTCTCACATGTGCTTATGCGGTAGTTTGCATTGCTAAGGCCATTCATGGAGTTGAAAAGGAGAAAGAGAAGTTTGCTTTTGCATTCACGGTGGATTGCAGGGCCAGGTTGGAGCCTCCAATCCCTGAGAACTATTTCGGCAACTGTGTGTGGGGTAATTTGGTGGATGCTGACCCACTAGACTTCATAAAGGAAGAAGCTTTTGGTATTGTTGCAAAGAGTATTCATAGTAAAATAAAAGAGATGTTAGATAAGGGGATTTTTCATGGGGCGGATAGTTCGTTTTCTAAATACGAGTCTATGGCAAAGGAGAAAGTTGAAGTCTTTGCAATTGCTGGGTCTAATCGATTTGGAGTTTATGGAACTGATTTTGGTTGGGGGAAGCCTGCAAAGGTCGAGATAACATCGGTGGGTAGAGGTTTAACCATTGGGCTGGCAGAGAGCAAAGATGGGAATGGTGGAGTTGAAGTGGGGCTTGTTCTGAAGAAAAATGTCATGGATCTCTTTGCTACTCTGTTTCGTCGAGGAGTGTCAGATGAGTAA

Predicted protein sequences of Glyma08g27120

Limit To All Plant Sequences

>Glyma08g27120.1   sequence type=predicted peptide   gene model=Glyma08g27120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSHNIKIQYHSRVSPPSATQTSLSLTFFDLFWLRFHPVERIFFYTLPTPQSNPSIFYSKIVPKLKTSLSHTLQHFPPLAGNVVWPNDSPNPIVQYTPGNSVSFVVAESEADFNHVLDNSPHQASEGFSIGISTHHSVLDGKSSTLFIKAWSSLCQTNDDESSESSSPSLAPKLVPFFNRSVIRTPRELGLNFPTNWTEALTKLFPTGNSDGRCLKLLPFPPRLEDEVRARFVLTGADLEKLRKGVLSKWDIVERGTESEAPRLSSFVLTCAYAVVCIAKAIHGVEKEKEKFAFAFTVDCRARLEPPIPENYFGNCVWGNLVDADPLDFIKEEAFGIVAKSIHSKIKEMLDKGIFHGADSSFSKYESMAKEKVEVFAIAGSNRFGVYGTDFGWGKPAKVEITSVGRGLTIGLAESKDGNGGVEVGLVLKKNVMDLFATLFRRGVSDE*

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