Glyma08g27110 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g27110

Feature Type:	gene_model
Chromosome:	Gm08
Start:	21438711
stop:	21439641
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35150	AT	Annotation by Michelle Graham. TAIR10: O-methyltransferase family protein \| chr4:16726948-16728531 REVERSE LENGTH=325	SoyBase	E_val: 3.00E-38	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: O-methyltransferase activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
KOG3178	KOG	Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases	JGI		ISS
PTHR11746	Panther	O-METHYLTRANSFERASE	JGI		ISS
PF00891	PFAM	O-methyltransferase	JGI		ISS
PF08100	PFAM	Dimerisation domain	JGI		ISS
UniRef100_I1KWG0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWG0_SOYBN	SoyBase	E_val: 2.00E-172	ISS
UniRef100_Q84KK5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoflavone 7-O-methyltransferase n=1 Tax=Glycyrrhiza echinata RepID=D7OMT_GLYEC	SoyBase	E_val: 3.00E-130	ISS

Expression Patterns of Glyma08g27110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g27110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g247000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g27110

Limit To All Plant Sequences

>Glyma08g27110.2   sequence type=CDS   gene model=Glyma08g27110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTCTCAAATGGATGGTTGAGCTTCACATACCAGACATAATCCACAACCATGCCCAACCCATTACTCTTCCTGAGTTGGTGTCTATTCTACAAGTTCCTCCTACTAAAATTGGTCAGGTACATAGCCTCATGCGCTACTTGGCACACAGTGGATTCTTTGAAAGAGTAAGAATCCATCACAACATAGAAGAAAAAGAAGCATATGCTCTCACTGCTGCATCAGAGTTACTTCTCAAAAGCAGTGAGCTTAGTTTAGCTCCAATGGTTGAGTTTGTTCTCGACCCAACTCTGTCAGATTCATACCATCAACTGAAAAAGTGGGTTTATGAGAAAGATCTCACATTGTTTGACATCTCCTTTAGGATCACATTGATATTCAATGAAGCAATGGCTAGTGATTCTCAAATGAGTAACTTGGCATTGAGAGATTGCAAGTTGGTGTTTGAAGGACTAGAATCCATTGTGGATGTTGGTGGTGGAACTGGAACCACTGCCAAGATTATCTGTGAAGCATTTCCTAACTTGAAATGCATTGTGTTTGACCGTCCACAAGTTGTGGAGAACTTGTCAGGAAGCCTCAATTTGACATATGTAGGTGGGGACATGTTCAAATCTATTCCCAAGGTTGATGCAGTTCTGCTTAAGTGGATTCTACATAATTGGATTGATAAAGATCGCATAAAGATATTAAAGAATTGTAAAGAAGCTATTTCAAATGAGGGTGGCAAAAGAGGAAAAGTGATTATCATAGATGTTGTGATCATATAA

Predicted protein sequences of Glyma08g27110

Limit To All Plant Sequences

>Glyma08g27110.2   sequence type=predicted peptide   gene model=Glyma08g27110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCLKWMVELHIPDIIHNHAQPITLPELVSILQVPPTKIGQVHSLMRYLAHSGFFERVRIHHNIEEKEAYALTAASELLLKSSELSLAPMVEFVLDPTLSDSYHQLKKWVYEKDLTLFDISFRITLIFNEAMASDSQMSNLALRDCKLVFEGLESIVDVGGGTGTTAKIICEAFPNLKCIVFDRPQVVENLSGSLNLTYVGGDMFKSIPKVDAVLLKWILHNWIDKDRIKILKNCKEAISNEGGKRGKVIIIDVVII*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain