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Report for Sequence Feature Glyma08g27050

Feature Type:gene_model
Chromosome:Gm08
Start:21392963
stop:21395430
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g27050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54160AT Annotation by Michelle Graham. TAIR10: O-methyltransferase 1 | chr5:21982075-21984167 FORWARD LENGTH=363 SoyBaseE_val: 2.00E-17ISS
GO:0006598GO-bp Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009698GO-bp Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process SoyBaseN/AISS
GO:0009805GO-bp Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process SoyBaseN/AISS
GO:0009809GO-bp Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process SoyBaseN/AISS
GO:0009963GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0042398GO-bp Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process SoyBaseN/AISS
GO:0051555GO-bp Annotation by Michelle Graham. GO Biological Process: flavonol biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0030744GO-mf Annotation by Michelle Graham. GO Molecular Function: luteolin O-methyltransferase activity SoyBaseN/AISS
GO:0030755GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-methyltransferase activity SoyBaseN/AISS
GO:0033799GO-mf Annotation by Michelle Graham. GO Molecular Function: myricetin 3'-O-methyltransferase activity SoyBaseN/AISS
GO:0047763GO-mf Annotation by Michelle Graham. GO Molecular Function: caffeate O-methyltransferase activity SoyBaseN/AISS
PF00891PFAM O-methyltransferase JGI ISS
UniRef100_I1N4K6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4K6_SOYBN SoyBaseE_val: 4.00E-68ISS
UniRef100_Q84KK5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Isoflavone 7-O-methyltransferase n=1 Tax=Glycyrrhiza echinata RepID=D7OMT_GLYEC SoyBaseE_val: 4.00E-57ISS

Expression Patterns of Glyma08g27050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g27050 not represented in the dataset
Glyma08g27050 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g27050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g27050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g27050
>Glyma08g27050.1   sequence type=CDS   gene model=Glyma08g27050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGGGTGGCATCAGAGCATCATCTGTTTACTCCTCTTCTCATGAAATTGAGGAACACGATAATGAGCAGCCATTGGATGGATTGCAAGATAGAGTCAATCTTCTGAAAAGAGTAGTTGAGTGTTTTCTTGACCCAACTTTTTCAACTTCATGGCATCATTTGAAGAAGTGGATTTATGAGGATGATCTCACACTCTTTGGTATCTCATTAGGGTCACACTTGTGGGATTTTGTCAATAAAAGCCCAGAACATAACAAGTCATTCAATGAGACAATGGCTAGTGATTCTCAGATGATGAACTTGGTGTTGAGAGATTGCAATTGGGTCTTGGAAGGACTAGAGTCCATTGTGGATGTTGGTGGTGGAACTGGAATCACAGTCAAGATTACCTTGTTGGAATGTCCACATGTTGTAGAAAACTTGTCAGGATGCAACAATTTGGCATATGTTGGTGAGGACATGTTTAAATCTATTCCCAAGGTCGATGCAGTTCAACTAAGGTATGTATGCATGTGTAAACAAAGATTTTTTAAACTTGTTTAG
Predicted protein sequences of Glyma08g27050
>Glyma08g27050.1   sequence type=predicted peptide   gene model=Glyma08g27050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
EGGIRASSVYSSSHEIEEHDNEQPLDGLQDRVNLLKRVVECFLDPTFSTSWHHLKKWIYEDDLTLFGISLGSHLWDFVNKSPEHNKSFNETMASDSQMMNLVLRDCNWVLEGLESIVDVGGGTGITVKITLLECPHVVENLSGCNNLAYVGEDMFKSIPKVDAVQLRYVCMCKQRFFKLV*






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