Glyma08g27040 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g27040

Feature Type:	gene_model
Chromosome:	Gm08
Start:	21377444
stop:	21384794
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60980	AT	Annotation by Michelle Graham. TAIR10: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain \| chr5:24543988-24546027 FORWARD LENGTH=460	SoyBase	E_val: 1.00E-101	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006913	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0116	KOG	RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains	JGI		ISS
PTHR10693	Panther	RNA-BINDING RAS-GAP SH3 BINDING PROTEIN RELATED	JGI		ISS
PTHR10693:SF8	Panther	NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN /	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
PF02136	PFAM	Nuclear transport factor 2 (NTF2) domain	JGI		ISS
UniRef100_B9SNQ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ras-GTPase-activating protein-binding protein, putative n=1 Tax=Ricinus communis RepID=B9SNQ0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0001BA5F99	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001BA5F99 related cluster n=1 Tax=unknown RepID=UPI0001BA5F99	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g27040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27040

Paralog	Evidence	Comments
Glyma18g50250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g246600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g27040

Limit To All Plant Sequences

>Glyma08g27040.2   sequence type=transcript   gene model=Glyma08g27040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAGTATTTAGTTACTTATAAAATACATTTATACATTGAATCTCCGTAAAATTTAATTTTGTAAATACAATAATCAAATTACTTTTACAAACTCCTAACTTAAGTTTAATTTAAGCGTGTAGACTTTAATCCAAACAAGCTACATTAGATTATAGGACTTGTGTAAACACTGAACAGAGTTATGCGGTGATTTGCGGACGTGCGTGAGAGTTAACCTCAAAAGTCAAGTCAAATCTAAGTTGCGTTGTTGGCAGTTTCCTGAGTGGTGAACCTCACGAACCGTACGTGCATGAACCGGACCCAAATAATAACTTCACAGTGAGTTAAGCGTTTCACTGATCACAGACACAGGTAGCTTTCGCACACTCCCTTTTTTCGTGCGCAAACTGTTCCCGTTGGTCTCTTTCCCTCTGCACTTCACAATCCTACCCTCTCACTGTGCTATCTCTCAGCATCTTCGCAATCACACCCTTCCCAGATGGCCTTGCAAACAGCTACTCCTCCAACAACTCCCAGTGCCCAAGTTGTTGGTAATGCATTTGTTGAGCAGTATTACCATATTCTTCACCATTCACCAGGTTCGGTCTATCGGTTTTACCAGGACTCTAGTGTGATAAGCCGTCCTGATTCCAGTGGTGTGATGACATCAGTTACAACCATGAAAGGCATTAATGAGAAGATTCTTTCACTAAATTTCAAGGAATTTAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCATACAAGGAAGGAGTGACTGTGTTGGTGACTGGATGCTTGACTGGCAAGGATAACTTGAGAAGAAAATTTGCACAGTCATTCTTTCTTGCTCCACAAGACAATGGCTATTTTGTTCTGAATGATGTTTTTAGGTATGTAGAAGACCATGAACCATCAGAACTGCCTCCAGTTACTGGAGATGGTGATTCAGCTGCTGTTACAGTAACACCAGAACTAGAACCCAGTCATGTTGCTGATTCTTGTGCACCAGAGCCCACAAATTCTCATGTGAACAAAGGTCAAACTGTTGCTGAGAATGCTTATGAGCTATCTAATAATCATGAGAGACAGATACCTGTTGAGAATGAAGGCAATGTAGAATCACATTTTCAGTCAAATGGTAATGATGATTCTCAGGCCACAGAACTGGCTTCATCAGCTCAAGACGATGCTCCAAAGAAGTCTTATGCATCAATTGTGAAAGTCCAAAAAGGGAGTTCAGTTCCAACTAAAGTCTATGTGCCTACTAATACACTAAAGTCTGGGCCTAACAAAACTGAGAGCAAGGTAGTTGAGTCAGTAGAATCTACTGAAGTGCCTGAAGCAGCTTTGGAAAGTGTTAGCAACCCTGAAAGTAGTGATGCTCATGAGGAAGTTGAGGGTCACTCCATATACATTCGAAATTTGCCTTTAAATGTGACGGTTGCTCAGTTGGAACTGGAGTTTAAGAAATTTGGGCCCATCAAGCCAGGAGGCATCCAAGTCAGAAATAATAAGCAGGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTCTAAATTCCATGAATAGTGCAATTCAGGCTTCACCTGTTCCTATTGGGGGGCGTCAAGCTGTAGTCGAGATAAAGAGAACCACTACCCGAGTTGGCAGTGGCATTAATGGTACTGGAAGACCTAGGATCCCATCTGGTAGGGGTGGGTTACGAAATGACTCTTTCAGGGGTCGTGGGAATTATGTTGGGGGTCGGGGATACGGTCGAAATGATTATGTAAGCCGTGGCGGGTTTTCTGGTAGGGGTCGTGGTCATGGAGAAGGTTATCACCAAGGGAGAGGGAGAGGCGGCCGGTCAAGTGGACAAAAACAAAATGCTGTTTCCAACTGAAATACTGGATGATTTTTGGGAGGTTGTTCTGAGACCCCCCTTTTTGGGTCAGTTATGAGCATGGAATTCAACCTTCTAAAGTTTCTCATGTTTCTTTCACTGCAATTTGCACAGTTGTAGTATTTCTAGTTGTTATTGCTATGATTTTAGTGGGTTGGTAGTGATCACTGATCAGGAATAGGTATAGTCTTTTCTTTTGAAAAATTGAAACATGCTATGACTGGAATTAGCAGTAGGTTAACCATCAGTTCTCTTTTATTTGTTGCTATGGTGCAACATTTTTATATCTAAGTTGAGATTTTAATTTTAAAAGGTTATTATTGGTTCCATTTTTTTTATATACTTGGAAAATCTAGGAATGACTTAGGTCAACTGCTGGTTTTATGTTTTTGCTGTGCTATCTGTTTGGGAAGGCGCTGAAGAGGAAGAATTAAATGGAAACTGGGTGAATAACCAAGAGCAAGAACTGTTAAATACTGTATTGTTAAAGGATGAAGATAATGTGGTAAAATGGTGTTTATAATTGCATTTTAAATTTTAAAAGCTGTTTATTTCCAAAT

Coding sequences of Glyma08g27040

Limit To All Plant Sequences

>Glyma08g27040.1   sequence type=CDS   gene model=Glyma08g27040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTGCAAACAGCTACTCCTCCAACAACTCCCAGTGCCCAAGTTGTTGGTAATGCATTTGTTGAGCAGTATTACCATATTCTTCACCATTCACCAGGTTCGGTCTATCGGTTTTACCAGGACTCTAGTGTGATAAGCCGTCCTGATTCCAGTGGTGTGATGACATCAGTTACAACCATGAAAGGCATTAATGAGAAGATTCTTTCACTAAATTTCAAGGAATTTAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCATACAAGGAAGGAGTGACTGTGTTGGTGACTGGATGCTTGACTGGCAAGGATAACTTGAGAAGAAAATTTGCACAGTCATTCTTTCTTGCTCCACAAGACAATGGCTATTTTGTTCTGAATGATGTTTTTAGGTATGTAGAAGACCATGAACCATCAGAACTGCCTCCAGTTACTGGAGATGGTGATTCAGCTGCTGTTACAGTAACACCAGAACTAGAACCCAGTCATGTTGCTGATTCTTGTGCACCAGAGCCCACAAATTCTCATGTGAACAAAGGTCAAACTGTTGCTGAGAATGCTTATGAGCTATCTAATAATCATGAGAGACAGATACCTGTTGAGAATGAAGGCAATGTAGAATCACATTTTCAGTCAAATGGTAATGATGATTCTCAGGCCACAGAACTGGCTTCATCAGCTCAAGACGATGCTCCAAAGAAGTCTTATGCATCAATTGTGAAAGTCCAAAAAGGGAGTTCAGTTCCAACTAAAGTCTATGTGCCTACTAATACACTAAAGTCTGGGCCTAACAAAACTGAGAGCAAGGTAGTTGAGTCAGTAGAATCTACTGAAGTGCCTGAAGCAGCTTTGGAAAGTGTTAGCAACCCTGAAAGTAGTGATGCTCATGAGGAAGTTGAGGGTCACTCCATATACATTCGAAATTTGCCTTTAAATGTGACGGTTGCTCAGTTGGAACTGGAGTTTAAGAAATTTGGGCCCATCAAGCCAGGAGGCATCCAAGTCAGAAATAATAAGCAGCAGGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTCTAAATTCCATGAATAGTGCAATTCAGGCTTCACCTGTTCCTATTGGGGGGCGTCAAGCTGTAGTCGAGATAAAGAGAACCACTACCCGAGTTGGCAGTGGCATTAATGGTACTGGAAGACCTAGGATCCCATCTGGTAGGGGTGGGTTACGAAATGACTCTTTCAGGGGTCGTGGGAATTATGTTGGGGGTCGGGGATACGGTCGAAATGATTATGTAAGCCGTGGCGGGTTTTCTGGTAGGGGTCGTGGTCATGGAGAAGGTTATCACCAAGGGAGAGGGAGAGGCGGCCGGTCAAGTGGACAAAAACAAAATGCTGTTTCCAACTGA

>Glyma08g27040.2   sequence type=CDS   gene model=Glyma08g27040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTGCAAACAGCTACTCCTCCAACAACTCCCAGTGCCCAAGTTGTTGGTAATGCATTTGTTGAGCAGTATTACCATATTCTTCACCATTCACCAGGTTCGGTCTATCGGTTTTACCAGGACTCTAGTGTGATAAGCCGTCCTGATTCCAGTGGTGTGATGACATCAGTTACAACCATGAAAGGCATTAATGAGAAGATTCTTTCACTAAATTTCAAGGAATTTAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCATACAAGGAAGGAGTGACTGTGTTGGTGACTGGATGCTTGACTGGCAAGGATAACTTGAGAAGAAAATTTGCACAGTCATTCTTTCTTGCTCCACAAGACAATGGCTATTTTGTTCTGAATGATGTTTTTAGGTATGTAGAAGACCATGAACCATCAGAACTGCCTCCAGTTACTGGAGATGGTGATTCAGCTGCTGTTACAGTAACACCAGAACTAGAACCCAGTCATGTTGCTGATTCTTGTGCACCAGAGCCCACAAATTCTCATGTGAACAAAGGTCAAACTGTTGCTGAGAATGCTTATGAGCTATCTAATAATCATGAGAGACAGATACCTGTTGAGAATGAAGGCAATGTAGAATCACATTTTCAGTCAAATGGTAATGATGATTCTCAGGCCACAGAACTGGCTTCATCAGCTCAAGACGATGCTCCAAAGAAGTCTTATGCATCAATTGTGAAAGTCCAAAAAGGGAGTTCAGTTCCAACTAAAGTCTATGTGCCTACTAATACACTAAAGTCTGGGCCTAACAAAACTGAGAGCAAGGTAGTTGAGTCAGTAGAATCTACTGAAGTGCCTGAAGCAGCTTTGGAAAGTGTTAGCAACCCTGAAAGTAGTGATGCTCATGAGGAAGTTGAGGGTCACTCCATATACATTCGAAATTTGCCTTTAAATGTGACGGTTGCTCAGTTGGAACTGGAGTTTAAGAAATTTGGGCCCATCAAGCCAGGAGGCATCCAAGTCAGAAATAATAAGCAGGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTCTAAATTCCATGAATAGTGCAATTCAGGCTTCACCTGTTCCTATTGGGGGGCGTCAAGCTGTAGTCGAGATAAAGAGAACCACTACCCGAGTTGGCAGTGGCATTAATGGTACTGGAAGACCTAGGATCCCATCTGGTAGGGGTGGGTTACGAAATGACTCTTTCAGGGGTCGTGGGAATTATGTTGGGGGTCGGGGATACGGTCGAAATGATTATGTAAGCCGTGGCGGGTTTTCTGGTAGGGGTCGTGGTCATGGAGAAGGTTATCACCAAGGGAGAGGGAGAGGCGGCCGGTCAAGTGGACAAAAACAAAATGCTGTTTCCAACTGA

Predicted protein sequences of Glyma08g27040

Limit To All Plant Sequences

>Glyma08g27040.1   sequence type=predicted peptide   gene model=Glyma08g27040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALQTATPPTTPSAQVVGNAFVEQYYHILHHSPGSVYRFYQDSSVISRPDSSGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSYKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVEDHEPSELPPVTGDGDSAAVTVTPELEPSHVADSCAPEPTNSHVNKGQTVAENAYELSNNHERQIPVENEGNVESHFQSNGNDDSQATELASSAQDDAPKKSYASIVKVQKGSSVPTKVYVPTNTLKSGPNKTESKVVESVESTEVPEAALESVSNPESSDAHEEVEGHSIYIRNLPLNVTVAQLELEFKKFGPIKPGGIQVRNNKQQGYCFGFVEFLSLNSMNSAIQASPVPIGGRQAVVEIKRTTTRVGSGINGTGRPRIPSGRGGLRNDSFRGRGNYVGGRGYGRNDYVSRGGFSGRGRGHGEGYHQGRGRGGRSSGQKQNAVSN*

>Glyma08g27040.2   sequence type=predicted peptide   gene model=Glyma08g27040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALQTATPPTTPSAQVVGNAFVEQYYHILHHSPGSVYRFYQDSSVISRPDSSGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSYKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVEDHEPSELPPVTGDGDSAAVTVTPELEPSHVADSCAPEPTNSHVNKGQTVAENAYELSNNHERQIPVENEGNVESHFQSNGNDDSQATELASSAQDDAPKKSYASIVKVQKGSSVPTKVYVPTNTLKSGPNKTESKVVESVESTEVPEAALESVSNPESSDAHEEVEGHSIYIRNLPLNVTVAQLELEFKKFGPIKPGGIQVRNNKQGYCFGFVEFLSLNSMNSAIQASPVPIGGRQAVVEIKRTTTRVGSGINGTGRPRIPSGRGGLRNDSFRGRGNYVGGRGYGRNDYVSRGGFSGRGRGHGEGYHQGRGRGGRSSGQKQNAVSN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain