Glyma08g27010 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g27010

Feature Type:	gene_model
Chromosome:	Gm08
Start:	21355945
stop:	21360054
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g27010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13740	AT	Annotation by Michelle Graham. TAIR10: ABI five binding protein 2 \| chr1:4713969-4715158 FORWARD LENGTH=348	SoyBase	E_val: 2.00E-60	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF07897	PFAM	Protein of unknown function (DUF1675)	JGI		ISS
UniRef100_B9RED1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RED1_RICCO	SoyBase	E_val: 6.00E-67	ISS
UniRef100_I1KWF4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWF4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g27010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g27010

Paralog	Evidence	Comments
Glyma18g50240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g27010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g246400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g27010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g27010

Limit To All Plant Sequences

>Glyma08g27010.1   sequence type=CDS   gene model=Glyma08g27010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAAGTTGAAGACAGAGACAACAACACTCGTCACCACCATCATTACATTTCTTCAACAACAACAACACAATCTCCAATGAACAATTTCCCGCGAGATCTGTTAAGAACCTTCATGGGAGTGAACAATAATAATAATAATAATAATAATAGTAATAATAATAATCACCACAATTTGCCTATGCCAGTGGTGAAGTTAGAGGAGGAGTTAGAACTAAGTCTCGACCTTTCGATGAATGGTCGATTTGGGGTGGACCCCACGGCGAAGAAGATAAAGAGAACAACTTCGATACCGGAGTTTGCAAGCGACAAGGAGATGGGATTTGCTACGGTGGGGTGCACGGGGTCTCTGGTGAGGACGTGTTCGCTTCCGACGGAGACCGAGGAGGAGTGGCGGAAGAGGAAGGAGTTGCAGACGCTGCGGCGGATGGAGGCGCGGAGGAAGCGCTCCGAGAAGCAGAGGAACATGAAAGCCTTGAGAGAACAACAACAGAGGGTTGTTGGTGTTGTTGGGTCCCAAGGGAGCAATCCGGTGGATCAAGGTGCAGGGGAGTACGGTGAGGTTGCAGTTGCACCACCCTTGGCGAGAACTGTGTCGTTGACCACACGTGTTTGTGGACTCGGCTTGAATGGGGACAGTGAAAAAGAGAAGAAGAGTGGAATAGTGTTGCCACCTCCCTCGCCTTCTCAGGGTTCCATTGGTTCTTCCGGAATCTCTGAAGCTGAGTCTCAACAGGGTCAAGGAACAACACCTATGGATGTTAGAAGCCCTACTAGTGCTAACTTGTTGCCAGACAGTGAACTGAAATCACCAGCAGGTGTTGCTGAGAACAACACAGGCAAGAATGCTGCTGCTGCTGTAGTGACAATGAGAAGTCAATCTAACAAACATTCACCACCACAGAGCAGAACCAAAGACATTGTGAGGAACTTGTTGGAAGACATGCCCTGTGTCTCCACCAAAGGAGAGGGCCCTAATGGGAAAAGAATAGAAGGCTTTCTTTACCGGTATGGAAAAGGTGAGGAAGTGAGGATAGTTTGCGTTTGCCATGGCAGTTTTCTCACCCCTTCTGAGTTTGTCAAGCATGCCGGTGGCGGTGACGTGGCAAACCCCTTGAAACATATTGTTGTTAGTCCGAGCTTGTTGTGA

Predicted protein sequences of Glyma08g27010

Limit To All Plant Sequences

>Glyma08g27010.1   sequence type=predicted peptide   gene model=Glyma08g27010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEVEDRDNNTRHHHHYISSTTTTQSPMNNFPRDLLRTFMGVNNNNNNNNNSNNNNHHNLPMPVVKLEEELELSLDLSMNGRFGVDPTAKKIKRTTSIPEFASDKEMGFATVGCTGSLVRTCSLPTETEEEWRKRKELQTLRRMEARRKRSEKQRNMKALREQQQRVVGVVGSQGSNPVDQGAGEYGEVAVAPPLARTVSLTTRVCGLGLNGDSEKEKKSGIVLPPPSPSQGSIGSSGISEAESQQGQGTTPMDVRSPTSANLLPDSELKSPAGVAENNTGKNAAAAVVTMRSQSNKHSPPQSRTKDIVRNLLEDMPCVSTKGEGPNGKRIEGFLYRYGKGEEVRIVCVCHGSFLTPSEFVKHAGGGDVANPLKHIVVSPSLL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain