Glyma08g26990 - SoyBase

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Report for Sequence Feature Glyma08g26990

Feature Type:	gene_model
Chromosome:	Gm08
Start:	21320157
stop:	21323567
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g26990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02130	AT	Annotation by Michelle Graham. TAIR10: receptor-like protein kinase 2 \| chr3:380726-384181 FORWARD LENGTH=1151	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009808	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin metabolic process	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0009942	GO-bp	Annotation by Michelle Graham. GO Biological Process: longitudinal axis specification	SoyBase	N/A	ISS
GO:0009945	GO-bp	Annotation by Michelle Graham. GO Biological Process: radial axis specification	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0010152	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen maturation	SoyBase	N/A	ISS
GO:0048508	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryonic meristem development	SoyBase	N/A	ISS
GO:0048653	GO-bp	Annotation by Michelle Graham. GO Biological Process: anther development	SoyBase	N/A	ISS
GO:0051260	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein homooligomerization	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF99	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_G5EM40	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor-like kinase n=1 Tax=Lotus japonicus RepID=G5EM40_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_UPI00023390C4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023390C4 related cluster n=1 Tax=unknown RepID=UPI00023390C4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g26990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g26990

Paralog	Evidence	Comments
Glyma18g50201	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g26990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g246100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g26990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g26990

Limit To All Plant Sequences

>Glyma08g26990.1   sequence type=CDS   gene model=Glyma08g26990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCTTCTTCTTCAGTGATCAAATGGAGGTTCCATCACAAGCCCATGACGCTCGTGCGACTCTTCACACTCGCGTCCCTCCTTATGCTCTCTCTAAACGACGTCGTTTCGTCAGATTCCGACAAATCAGTGCTCCTCGAGCTGAAACACTCGCTCTCCGACCCTTCCGGGCTGCTCGCCACGTGGCAGGGCTCCGACCACTGCGCGTGGTCCGGCGTGCTCTGTGACTCCGCCGCGCGCCGCCGCGTCGTCGCGATCAACGTCACCGGCAACGGAGGTAACCGTAAACCCCCTTCTCCGTGCTCCGATTACGCTCAATTCCCCTTCTATGGGTTCGGAATTAGGAGGAGCTGTGACGGTTTTCGTGGCGCATTGTTCGGTAAGCTTTCTCCGAAGCTCAGTGAACTAGCGGAACTTAGGGTTTTGTCCCTTCCCTTCAATGGCCTCGAGGGAGAGATTCCCGAAGAAATTTGGGGAATGGAGAAGTTGGAGGTGCTTGATCTTGAAGGGAATTTGATAAGTGGGGTTCTACCTATTAGGTTTAATGGATTGAAAAACTTGAGGGTTCTTAATCTAGGGTTTAATAGGTTTGTTGGGGAGATTCCGAGTTCGTTGTCTAATGTTAAGAGTTTGGAGGTTTTGAATTTGGCAGGGAATGGGATTAACGGGTCTGTTTCTGGTTTTGTTGGGAGGTTGAGAGGGGTGTATTTGTCTTATAACTTGCTTGGTGGGGCAATTCCGGAGGAGATTGGGGAACATTGTGGGCAGCTGGAGCATCTTGATTTGTCTGGTAATCTTTTGATGCAGGGAATTCCGGGGAGTTTGGGGAATTGTAGTGAGTTGAGGACGGTTTTGTTGCATTCAAATATATTGGAGGATGTCATTCCTGCTGAGCTTGGGAGGCTTAGGAAGCTTGAGGTGTTGGATGTGTCGAGGAATACGCTCGGTGGGCAGGTGCCTATGGAGCTTGGGAATTGTACTGAGTTGTCTGTGCTGCTTTTGTCTAATCTTTTTAGTTCAGTTCCGGATGTTAATGGTACTTTGGGGGACTCGGGGGTGGAGCAGATGGTTGCTATGAATATTGATGAGTTTAATTACTTTGAAGGTCCGGTTCCTGTTGAGATTATGAACCTTCCTAAGCTGAGACTGCTGTGGGCGCCTAGGGCGAATCTGGAAGGCAGTTTTATGAGCAGTTGGGGCAAGTGTGATAGCTTGGAGATGCTAAATTTGGCTCAAAATGATTTCACTGGGGATTTTCCTAATCAGCTTGGTGGCTGCAAGAATCTCCATTTTCTTGATTTGAGTGCAAATAACCTTACTGGTGTGCTAGCGGAAGAACTTCCTGTCCCTTGTATGACTGTGTTTGATGTTAGTGGGAATGTCTTATCTGGCCCAATTCCTCAATTCTCTGTTGGCAAGTGTGCTTCAGTTCCTTCCTGGAGTGGAAATCTGTTTGAAACAGACGACAGAGCGCTTCCGTACAAATCCTTTTTTGCATCTAAGATTCTTGGGGGGCCCATTTTGGCTTCACTAGGAGAAGTTGGCCGTTCCGTTTTTCACAACTTTGGTCAAAACAACTTTGTTAGCATGGAGTCATTGCCAATAGCACGTGACAAGCTGGGGAAGGGGTTGGTTTATGCAATTCTTGTGGGAGAAAACAAGTTGGCGGGACCTTTTCCTACTAATTTATTCGAGAAATGTGATGGGTTAAATGCATTGCTTTTAAATGTAAGTTATAATATGCTATCCGGTCAGATTCCTTCCAAGTTTGGCAGAATGTGCAGATCATTGAAATTCTTGGATGCATCAGGTAATCAGATTACTGGGCCAATTCCCGTAGGTTTGGGGGATATGGTCTCTCTTGTTTCTCTGAATCTAAGTCGGAACCGTTTACAAGGTCAGATTCTCGTCAGCATTGGCCAGTTGAAGCATCTGAAATTTCTCTCTTTGGCTGATAATAACATAGGTGGTTCCATCCCTACCAGCCTGGGGCGGTTGTACTCTTTAGAAGTCCTAGACCTTTCTTCAAATTCTCTTACAGGTGAAATTCCCAAAGGTATTGAGAACTTGAGAAACCTGACTGATGTTTTGCTTAACAATAACAAACTTTCTGGACAGATTCCTGCTGGTTTGGCAAATGTCAGTACACTGTCAGCATTTAATGTATCTTTCAATAACTTATCTGGATCTTTTCCTTCAAATGGTAACTCAATAAAATGCAGCAATGCTGTGGGGAATCCATTTTTACGTTCTTGCAATGAAGTTTCTCTTGCCGTGCCATCTGCTGACCAAGGGCAGGTTGATAATTCTAGTTCTTACACTGCTGCACCACCAGAAGTTACAGGCAAAAAGGGAGGGAATGGTTTCAATTCTATTGAAATAGCATCTATAACATCTGCATCAGCCATTGTTTCTGTGCTTCTAGCCCTAATCGTCCTTTTTATTTATACACAGAAGTGGAACCCTAGGTCCAGGGTTGTTGGGTCTATGAGAAAAGAAGTTACAGTGTTCACTGATATTGGGGTTCCATTGACATTTGAAAATGTTGTTCGAGCCACAGGAAATTTCAATGCTAGCAACTGCATTGGGAATGGGGGATTTGGAGCAACCTACAAGGCAGAGATAGTACCAGGAAACTTGGTGGCAATAAAACGTCTGGCAGTTGGACGATTCCAAGGTGTTCAACAATTCCATGCAGAGATTAAGACCCTTGGAAGGCTTCGTCATCCAAATCTTGTCACTCTGATTGGTTATCATGCCAGCGAGACTGAGATGTTTCTCATATACAACTATTTGCCAGGTGGCAATCTGGAAAAGTTTATCCAAGAGAGATCCACAAGGGCAGTGGATTGGAGGATTCTTCACAAGATTGCATTGGATATAGCCCGTGCACTTGCATACCTGCATGATCAGTGTGTACCCCGAGTTCTACATCGGGATGTCAAGCCCAGTAATATCTTGCTGGATGATGATTATAATGCTTATCTATCTGACTTTGGATTGGCTAGACTTCTGGGAACCTCAGAAACTCATGCTACCACTGGTGTAGCAGGGACCTTTGGCTATGTAGCTCCTGAATATGCCATGACTTGTCGTGTTTCCGACAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTACTCTCTGACAAGAAGGCATTGGATCCTTCATTTTCGTCATATGGGAATGGTTTCAACATAGTAGCATGGGCATGCATGCTACTGCGACAAGGCCAGGCAAAAGAGTTCTTTGCCGCCGGCTTATGGGATGCAGGACCTGAAGATGATTTGGTAGAGGTCCTACACCTGGCTGTTGTGTGTACGGTTGACTCTCTCTCAACCAGACCTTCAATGAAACATGTTGTACGGCGGCTTAAGCAACTTCAACCGCCATCATGCTAG

Predicted protein sequences of Glyma08g26990

Limit To All Plant Sequences

>Glyma08g26990.1   sequence type=predicted peptide   gene model=Glyma08g26990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSSSSVIKWRFHHKPMTLVRLFTLASLLMLSLNDVVSSDSDKSVLLELKHSLSDPSGLLATWQGSDHCAWSGVLCDSAARRRVVAINVTGNGGNRKPPSPCSDYAQFPFYGFGIRRSCDGFRGALFGKLSPKLSELAELRVLSLPFNGLEGEIPEEIWGMEKLEVLDLEGNLISGVLPIRFNGLKNLRVLNLGFNRFVGEIPSSLSNVKSLEVLNLAGNGINGSVSGFVGRLRGVYLSYNLLGGAIPEEIGEHCGQLEHLDLSGNLLMQGIPGSLGNCSELRTVLLHSNILEDVIPAELGRLRKLEVLDVSRNTLGGQVPMELGNCTELSVLLLSNLFSSVPDVNGTLGDSGVEQMVAMNIDEFNYFEGPVPVEIMNLPKLRLLWAPRANLEGSFMSSWGKCDSLEMLNLAQNDFTGDFPNQLGGCKNLHFLDLSANNLTGVLAEELPVPCMTVFDVSGNVLSGPIPQFSVGKCASVPSWSGNLFETDDRALPYKSFFASKILGGPILASLGEVGRSVFHNFGQNNFVSMESLPIARDKLGKGLVYAILVGENKLAGPFPTNLFEKCDGLNALLLNVSYNMLSGQIPSKFGRMCRSLKFLDASGNQITGPIPVGLGDMVSLVSLNLSRNRLQGQILVSIGQLKHLKFLSLADNNIGGSIPTSLGRLYSLEVLDLSSNSLTGEIPKGIENLRNLTDVLLNNNKLSGQIPAGLANVSTLSAFNVSFNNLSGSFPSNGNSIKCSNAVGNPFLRSCNEVSLAVPSADQGQVDNSSSYTAAPPEVTGKKGGNGFNSIEIASITSASAIVSVLLALIVLFIYTQKWNPRSRVVGSMRKEVTVFTDIGVPLTFENVVRATGNFNASNCIGNGGFGATYKAEIVPGNLVAIKRLAVGRFQGVQQFHAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDYNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGQAKEFFAAGLWDAGPEDDLVEVLHLAVVCTVDSLSTRPSMKHVVRRLKQLQPPSC*

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