Glyma08g26890 - SoyBase

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Report for Sequence Feature Glyma08g26890

Feature Type:	gene_model
Chromosome:	Gm08
Start:	21210431
stop:	21220669
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g26890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29390	AT	Annotation by Michelle Graham. TAIR10: RS2-interacting KH protein \| chr3:11289675-11294524 FORWARD LENGTH=578	SoyBase	E_val: 9.00E-157	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1960	KOG	Predicted RNA-binding protein, contains KH domains	JGI		ISS
PTHR15744	Panther	BLOM7	JGI		ISS
UniRef100_Q9LIA4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein RIK n=2 Tax=Arabidopsis thaliana RepID=RIK_ARATH	SoyBase	E_val: 4.00E-154	ISS
UniRef100_UPI000233EB4A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EB4A related cluster n=1 Tax=unknown RepID=UPI000233EB4A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g26890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g26890

Paralog	Evidence	Comments
Glyma18g50140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g26890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g245100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g26890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g26890

Limit To All Plant Sequences

>Glyma08g26890.4   sequence type=transcript   gene model=Glyma08g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACAACTCATCTTTTACTATAGGAGTACGAAACAGACGACGACGGTTTAATCTCTGCATTGTGTCGTTTAACCCATCTTCCGTAACGCATCCGTACGACTTTGGGCGTTAGGCACAAAACCCCGTTTCACCGACCAATCACGTTCGTTCCAACCTACCGACGCTCGCGTGAATCCTTTTTCGTTTTCGGGTATCGAAAACGAAGAAGAAGCATAGAGAACCAAAACGCGACGCAATTGCACTTTTTCTTCTTCTTTCGCAGCTCAGAATCGCTCAAACAATGACAGAGGATAGCAGCGTTAGGGTTTCTTCTTCCGACAAAACCTCCGCGGCCAACGATGCTTCGCAGACGCGGCAGAGAAAGAAGAGAAAGTGGGATCAACCGGCGGAGTCATTGATGCCAGTTGGGATGGCAGTTCCTGGAGCACTCCCTTTGAGCAATGCCGTGTCTCTTGGAGGGGTTGCATTTCCTGCCATGGCTCCGATGATCTCCGGAGCTCTTTTGAGGAATCCTCTGGCAGCTTCTTCTCAGCTTCCGCAACACACAGTTGCAGCTGCTGTTGCCGCACAAAAATTGAATCAACAAAAGATCCAAGATGAATTAATAATTGCTCGAGAAATTGTCATAAATGATGCAGAGTCTTCTGTTCGCTACAAGTTGACAAAACGCCAGACACAAGAGGAGATCCAGAGGTGCACTGGTGCCATAGTTATAACTAGGGGGAAGTATCGGCTACCTAATGCGCCACATGATGGAGGGAAGCCGCTGTATCTTCACATCTCTGCAGGAGCTCATATAAAAGAGACAGCAGAACGGATTTTAGCTGTTGATCGTGCTGCTGCAATGATTGAAGAAATGCTTAAACAGGAGCAAAATTCACAGTCAATTTCTTCCGCCTCACCTTCTGCTTTGGTTAATATACTGAAGATGCTGAGTACATGCGTGTTTTTGGGCTTTGATGCTGATCCTTCTTTGAACATTGTTGCTCGTATACGTGGACCAAATGACCAGTATATAAATCACATTATGAATGAAACAGGAGCAACAGTTGTACTGAGAGGACGTGGTTCAGGAAACAATGAATGCTTGAATGGAGAAGATGGACAGCAGCCCCTGCATCTGTTTTTGTCTAGTAACAATGCGAAAAGTCTTGAAGATGCTAAGCTTTTGGCTGAAAATCTTTTGGATACAATCTGTACGGAGTGTGGTGCTTTAAGGGTTTCATCATGTAAGGTTTATAGTGCTGTTCCACCTCCACAGCAGGTATACACTGCTGTTCCACCTCCCCAGCAGGTTTATAGCGGCCCTTCTTTGTTGAAGCAGATTCCTACTGCCATTTCACCCCCACAACAAGTTTATAGCGCTGTTCCACCCCCACAGCAGTTGTTGACTGGAGTTCAGAGTTCTGGAATTGACCTAGAGGCAGGTACTAGCCTAACCTCTAGTTCAATGTCAGCAGCTGGGGTCTTGACACCGGTTCCTCCAGCTTCCTTGGTTGGAGTGACTGGTGTCACTGGTTCCCTCACTTTAGGGACTCCATCACAATCTATAGGACATTTAAGCTCTGGGCCTCAAGCAAACATGATTGGTTATACTCCTCCCCCTTTAGTATCAGGTGGTACTAGCTATATTGGATATGGTGGATTATATCCTCAAGCTACCCCTTTGCAACAAGTTGCCCTTGCCTTGAGACACTCACCTCCTGTCACATCTACAGATGCTCCCACAACATCAGCATCAAATGGAGAATCCAGGCCAACCTCAAGCTCTGATCTTGAAAAGGAGAAACGGCCGCCTCAGAGACGAAAATTTCAAGAATTGCCAGTTGGTTCAAAAGGCACAACAAAACTCAATCAGGTATTTTCTCTGACCTTCTATGAAGCTAAAAGCCTGACACTGGACCTGTCTGTTGGGCCATTGGTTTGTATGTTTGACAGGGTTTTCAGTTTTGGAGGAGTAGGAGGGTGCTTGTGGCTTCACAGCATATGCCCTGTCCAATCCAAGATGTTATTCTGATATTTTCTTTCATTGGTAAAATTGCTGCAATATATTTTGTGGCATGCTTTTCAGCCATGCCCTCCTCTAGTCCTGCATATATGGACTGTCAATTTCCTGAAGAAAAGGGTTTACCATACCAGCACCAAATTGATGCCAATTCGTTAAATTGAAAAAAAGACAGTTAGAGATAGGAGAAAATATAAAACTAGAACATGAGATATCATAGCAAGGTATAATAAAAAAGGAATAAAATAAAAATTGTTTGTATGGGCAAAGTAAATTAAAAAAGCTCTTTCCCTTGATTGGTTATCCTTTGAAGAGACACTCTTAGAACATCTTACACCACCATTAATTCTTTTATGCTACCAATCAACCCATTGCTCACTAAAATATCCAGTTGTGTGCAAGATTTTTTATCATGATATTTTACATCAATGCTACATTTGGTATTGCTTTTATCATTTGCAGTTCAGTCTTAATTTGACTTTGTAGTTTGGCATGTTGGAACAATTAGTAAAGTATCTGATTCAAAAGTTGTGTTTGGGTTTTTGTTTTCTCCCACTCTAACTCAATTGCAGGGATTGCAACCTCTAAAACCTTATGAACAATCTGACGGTCTGGTTGTGAGGAATATATTAACAATGCCTGCCCCTAAGAAGTTGGTCCCGCCATCATCCAATGGAATGCCACCTCCTCTACTGAGAACCATGCCCCCACCACCTCCGCCTAAATTTTCTGATCCATTTGAAGTTAAAGTACACAACAAGAACAAGACTTTGCTTAAGACAAAATCTGATGCAGTTCCTGATACATTGGTCAACCTAATGGAATATGGAGAGGAGGATGATGATGATATAGACGATTCTAGTGAGGAATCACTTCCTCATGACACCCGAGCAACTGGGGTTCAAAAGCCTTTCTGGGCTTTATGAGCTACAAAGTGCATATTGGACGTAGATATGTAAATATTTATTTTTTGGGTTGGAACTAGTTCTTGCTGGTTACATACTCTTCTTCCCCGGGGTGGAATGGGAAGCCCTTAGCATGATTTTTGGAGTGAAATAGTTGGTTTAGTAGCATTTTAAAGGTTGTAATTGCTCATTCTCATATGCTTCGCGAGAGTAGATTTGTATGTTGTAATTTTTTGTCCCTATTTGAGTATGCATGTACACTGGTAGTCTCTTTTCAGTGGTTTAGTAGGCCGCTAAAGTAACGATGCTGTGATAAGGAACTGTTTTTTCCTTCTTCCCCCCATTTTTATAGTCAGAACCCTGTTAATTGTTCATCCTGGGCCCCTGGCTGAGTGAAACTAAGCTTCCATGTTAGATTGAACAAGCAATTGCAAAGCTTGTATTATTATTATTATTATTATTTTTTTTTTTTTACGTGGGTTACCTACCATCTTCATACATATCCGCA

Coding sequences of Glyma08g26890

Limit To All Plant Sequences

>Glyma08g26890.3   sequence type=CDS   gene model=Glyma08g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGAGGATAGCAGCGTTAGGGTTTCTTCTTCCGACAAAACCTCCGCGGCCAACGATGCTTCGCAGACGCGGCAGAGAAAGAAGAGAAAGTGGGATCAACCGGCGGAGTCATTGATGCCAGTTGGGATGGCAGTTCCTGGAGCACTCCCTTTGAGCAATGCCGTGTCTCTTGGAGGGGTTGCATTTCCTGCCATGGCTCCGATGATCTCCGGAGCTCTTTTGAGGAATCCTCTGGCAGCTTCTTCTCAGCTTCCGCAACACACAGTTGCAGCTGCTGTTGCCGCACAAAAATTGAATCAACAAAAGATCCAAGATGAATTAATAATTGCTCGAGAAATTGTCATAAATGATGCAGAGTCTTCTGTTCGCTACAAGTTGACAAAACGCCAGACACAAGAGGAGATCCAGAGGTGCACTGGTGCCATAGTTATAACTAGGGGGAAGTATCGGCTACCTAATGCGCCACATGATGGAGGGAAGCCGCTGTATCTTCACATCTCTGCAGGAGCTCATATAAAAGAGACAGCAGAACGGATTTTAGCTGTTGATCGTGCTGCTGCAATGATTGAAGAAATGCTTAAACAGGAGCAAAATTCACAGTCAATTTCTTCCGCCTCACCTTCTGCTTTGGTTAATATACTGAAGATGCTGAGTACATGCGTGTTTTTGGGCTTTGATGCTGATCCTTCTTTGAACATTGTTGCTCGTATACGTGGACCAAATGACCAGTATATAAATCACATTATGAATGAAACAGGAGCAACAGTTGTACTGAGAGGACGTGGTTCAGGAAACAATGAATGCTTGAATGGAGAAGATGGACAGCAGCCCCTGCATCTGTTTTTGTCTAGTAACAATGCGAAAAGTCTTGAAGATGCTAAGCTTTTGGCTGAAAATCTTTTGGATACAATCTGTACGGAGTGTGGTGCTTTAAGGGTTTCATCATGTAAGGTTTATAGTGCTGTTCCACCTCCACAGCAGGTATACACTGCTGTTCCACCTCCCCAGCAGGTTTATAGCGGCCCTTCTTTGTTGAAGCAGATTCCTACTGCCATTTCACCCCCACAACAAGTTTATAGCGCTGTTCCACCCCCACAGCAGTTGTTGACTGGAGTTCAGAGTTCTGGAATTGACCTAGAGGCAGGTACTAGCCTAACCTCTAGTTCAATGTCAGCAGCTGGGGTCTTGACACCGGTTCCTCCAGCTTCCTTGGTTGGAGTGACTGGTGTCACTGGTTCCCTCACTTTAGGGACTCCATCACAATCTATAGGACATTTAAGCTCTGGGCCTCAAGCAAACATGATTGGTTATACTCCTCCCCCTTTAGTATCAGGTGGTACTAGCTATATTGGATATGGTGGATTATATCCTCAAGCTACCCCTTTGCAACAAGTTGCCCTTGCCTTGAGACACTCACCTCCTGTCACATCTACAGATGCTCCCACAACATCAGCATCAAATGGAGAATCCAGGCCAACCTCAAGCTCTGATCTTGAAAAGGAGAAACGGCCGCCTCAGAGACGAAAATTTCAAGAATTGCCAGTTGGTTCAAAAGGCACAACAAAACTCAATCAGGGATTGCAACCTCTAAAACCTTATGAACAATCTGACGGTCTGGTTGTGAGGAATATATTAACAATGCCTGCCCCTAAGAAGTTGGTCCCGCCATCATCCAATGGAATGCCACCTCCTCTACTGAGAACCATGCCCCCACCACCTCCGCCTAAATTTTCTGATCCATTTGAAGTTAAAGTACACAACAAGAACAAGACTTTGCTTAAGACAAAATCTGATGCAGTTCCTGATACATTGGTCAACCTAATGGAATATGGAGAGGAGGATGATGATGATATAGACGATTCTAGTGAGGAATCACTTCCTCATGACACCCGAGCAACTGGGGTTCAAAAGCCTTTCTGGGCTTTATGA

>Glyma08g26890.4   sequence type=CDS   gene model=Glyma08g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGAGGATAGCAGCGTTAGGGTTTCTTCTTCCGACAAAACCTCCGCGGCCAACGATGCTTCGCAGACGCGGCAGAGAAAGAAGAGAAAGTGGGATCAACCGGCGGAGTCATTGATGCCAGTTGGGATGGCAGTTCCTGGAGCACTCCCTTTGAGCAATGCCGTGTCTCTTGGAGGGGTTGCATTTCCTGCCATGGCTCCGATGATCTCCGGAGCTCTTTTGAGGAATCCTCTGGCAGCTTCTTCTCAGCTTCCGCAACACACAGTTGCAGCTGCTGTTGCCGCACAAAAATTGAATCAACAAAAGATCCAAGATGAATTAATAATTGCTCGAGAAATTGTCATAAATGATGCAGAGTCTTCTGTTCGCTACAAGTTGACAAAACGCCAGACACAAGAGGAGATCCAGAGGTGCACTGGTGCCATAGTTATAACTAGGGGGAAGTATCGGCTACCTAATGCGCCACATGATGGAGGGAAGCCGCTGTATCTTCACATCTCTGCAGGAGCTCATATAAAAGAGACAGCAGAACGGATTTTAGCTGTTGATCGTGCTGCTGCAATGATTGAAGAAATGCTTAAACAGGAGCAAAATTCACAGTCAATTTCTTCCGCCTCACCTTCTGCTTTGGTTAATATACTGAAGATGCTGAGTACATGCGTGTTTTTGGGCTTTGATGCTGATCCTTCTTTGAACATTGTTGCTCGTATACGTGGACCAAATGACCAGTATATAAATCACATTATGAATGAAACAGGAGCAACAGTTGTACTGAGAGGACGTGGTTCAGGAAACAATGAATGCTTGAATGGAGAAGATGGACAGCAGCCCCTGCATCTGTTTTTGTCTAGTAACAATGCGAAAAGTCTTGAAGATGCTAAGCTTTTGGCTGAAAATCTTTTGGATACAATCTGTACGGAGTGTGGTGCTTTAAGGGTTTCATCATGTAAGGTTTATAGTGCTGTTCCACCTCCACAGCAGGTATACACTGCTGTTCCACCTCCCCAGCAGGTTTATAGCGGCCCTTCTTTGTTGAAGCAGATTCCTACTGCCATTTCACCCCCACAACAAGTTTATAGCGCTGTTCCACCCCCACAGCAGTTGTTGACTGGAGTTCAGAGTTCTGGAATTGACCTAGAGGCAGGTACTAGCCTAACCTCTAGTTCAATGTCAGCAGCTGGGGTCTTGACACCGGTTCCTCCAGCTTCCTTGGTTGGAGTGACTGGTGTCACTGGTTCCCTCACTTTAGGGACTCCATCACAATCTATAGGACATTTAAGCTCTGGGCCTCAAGCAAACATGATTGGTTATACTCCTCCCCCTTTAGTATCAGGTGGTACTAGCTATATTGGATATGGTGGATTATATCCTCAAGCTACCCCTTTGCAACAAGTTGCCCTTGCCTTGAGACACTCACCTCCTGTCACATCTACAGATGCTCCCACAACATCAGCATCAAATGGAGAATCCAGGCCAACCTCAAGCTCTGATCTTGAAAAGGAGAAACGGCCGCCTCAGAGACGAAAATTTCAAGAATTGCCAGTTGGTTCAAAAGGCACAACAAAACTCAATCAGGTATTTTCTCTGACCTTCTATGAAGCTAAAAGCCTGACACTGGACCTGTCTGTTGGGCCATTGGTTTGTATGTTTGACAGGGTTTTCAGTTTTGGAGGAGTAGGAGGGTGCTTGTGGCTTCACAGCATATGCCCTGTCCAATCCAAGATGTTATTCTGA

Predicted protein sequences of Glyma08g26890

Limit To All Plant Sequences

>Glyma08g26890.3   sequence type=predicted peptide   gene model=Glyma08g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEDSSVRVSSSDKTSAANDASQTRQRKKRKWDQPAESLMPVGMAVPGALPLSNAVSLGGVAFPAMAPMISGALLRNPLAASSQLPQHTVAAAVAAQKLNQQKIQDELIIAREIVINDAESSVRYKLTKRQTQEEIQRCTGAIVITRGKYRLPNAPHDGGKPLYLHISAGAHIKETAERILAVDRAAAMIEEMLKQEQNSQSISSASPSALVNILKMLSTCVFLGFDADPSLNIVARIRGPNDQYINHIMNETGATVVLRGRGSGNNECLNGEDGQQPLHLFLSSNNAKSLEDAKLLAENLLDTICTECGALRVSSCKVYSAVPPPQQVYTAVPPPQQVYSGPSLLKQIPTAISPPQQVYSAVPPPQQLLTGVQSSGIDLEAGTSLTSSSMSAAGVLTPVPPASLVGVTGVTGSLTLGTPSQSIGHLSSGPQANMIGYTPPPLVSGGTSYIGYGGLYPQATPLQQVALALRHSPPVTSTDAPTTSASNGESRPTSSSDLEKEKRPPQRRKFQELPVGSKGTTKLNQGLQPLKPYEQSDGLVVRNILTMPAPKKLVPPSSNGMPPPLLRTMPPPPPPKFSDPFEVKVHNKNKTLLKTKSDAVPDTLVNLMEYGEEDDDDIDDSSEESLPHDTRATGVQKPFWAL*

>Glyma08g26890.4   sequence type=predicted peptide   gene model=Glyma08g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEDSSVRVSSSDKTSAANDASQTRQRKKRKWDQPAESLMPVGMAVPGALPLSNAVSLGGVAFPAMAPMISGALLRNPLAASSQLPQHTVAAAVAAQKLNQQKIQDELIIAREIVINDAESSVRYKLTKRQTQEEIQRCTGAIVITRGKYRLPNAPHDGGKPLYLHISAGAHIKETAERILAVDRAAAMIEEMLKQEQNSQSISSASPSALVNILKMLSTCVFLGFDADPSLNIVARIRGPNDQYINHIMNETGATVVLRGRGSGNNECLNGEDGQQPLHLFLSSNNAKSLEDAKLLAENLLDTICTECGALRVSSCKVYSAVPPPQQVYTAVPPPQQVYSGPSLLKQIPTAISPPQQVYSAVPPPQQLLTGVQSSGIDLEAGTSLTSSSMSAAGVLTPVPPASLVGVTGVTGSLTLGTPSQSIGHLSSGPQANMIGYTPPPLVSGGTSYIGYGGLYPQATPLQQVALALRHSPPVTSTDAPTTSASNGESRPTSSSDLEKEKRPPQRRKFQELPVGSKGTTKLNQVFSLTFYEAKSLTLDLSVGPLVCMFDRVFSFGGVGGCLWLHSICPVQSKMLF*

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