SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64960 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr1:24129918-24134049 FORWARD LENGTH=1203 | SoyBase | E_val: 0 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| PTHR16199 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR16199:SF1 | Panther | gb def: hypothetical protein [arabidopsis thaliana] | JGI | ISS | |
| PF12422 | PFAM | Condensin II non structural maintenance of chromosomes subunit | JGI | ISS | |
| UniRef100_G7K2J6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Condensin-2 complex subunit G2 n=1 Tax=Medicago truncatula RepID=G7K2J6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J9E0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9E0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g26621 not represented in the dataset |
Glyma08g26621 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g26621.1 sequence type=CDS gene model=Glyma08g26621 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGTCGATGCTAGAGGCTTATGGGGATATTTTGTTTTGGGCATGGCCAGCTGCGCAAGGGGATTCGAGGACTGAGATTAAGAATGGGTTCTTGCAGGAAATGATTGAGGCTGCCATACACGCTAGTTTCGGAGCTTTTGCTTCATATATTATGAGGGTTTTGGAAGCTTTTATTAACCACAGGACCACCGATGGGGTTGAGAAAATCCTTTATCGACTCGCCGAGCCTGTCATATTTAGGTCTCTACAGGTTGCAAATTCAAATGTTTGTCAAAATACTTTGCATCTACTTCTAGACATGTTCCCCCTTGAAGATCCTGATGCCACAAATGAGGAGAAAGATACATTGCTTGATAAGCAATATGATTGTCTGGAAGTGAGAACAATTGTTGTTGAGGGTTCTTGTCGCATCCTTCATCTGTTTTGGGAAGTTATTCCTTCACTAATCATAACAAAGATGATAACAAAAATAGTTGATGATATATCACACGATGGATGCAATGAGGTTAGGCTTTCTATGTTGAATGGCATCATTTATTTACTTGGCAACCCCCAATCTCACGAAATTCTTAAGGTGTTGTTGCCCAGACTTCGGCACCTAATGTTGGACAAAGTCCTAGCAATACGAGTTGCTGCAGTGGATCTCTTACTCCATCTAAAGGATGTTCGAGATTTTCAGTTCAACAAGGCGGTGGAGCTAGATGTGCTATTGTCTGTGCTTACAAGTGATCAACCTCCCGTAGCTCAGAAGATAACAAAATTACTTCTACCTTCGCACTTTCCCTCAAAAGTACCTATTGAGGAGGCATGTAATCGTTGTGTTACACTTGTAAAAAGGGCTCCAATGGCTGGCGCAAGATTTTTCCAGTTTGCTATCTTGGAAAGAGCATCTAAATCTCATCTTATGGAACTGGTCAAAGTATTTCTGAGTTTAATTTTGTCACCAGATAAGCTAGATGCAAATCAGATTAACGGTTTCCTTGTTGCTACTAGCTATGTTTGTGATAGCTTGGCTTGTGAGCCATGCTATAAAAATGCTCTCAAAGAGTTACTCGATGGAGAGAAAATGAAAGGTCAAGCCCAATCTTCTTTATTCAACATTTTTTCCAATGTCTGTCCAGATGATGTTGCTAGACTTCTTGAAGAATGCATGGGTGTTGTCACAAACTGCAGTGGTTTACCCGAGGATGTTGATCGACAAATTGAAATCAGGTCTGCACACAAGTTGTTGCTTTCACTGGGTGGTTTTGATGACTTGATTGAGGCCTTAACGGCCTCCTTGCATAAGGTTGCCTATCGTTGCCACATTAAATTTGGTGTAGACATGCCATCTCATAGTGTTTCATTTGCTAAAAGAAAGAAATCTAAGTCCTCTGGAAAATTTTCAATTAAATCAAAGATAATTAACAGAAAACAATCTTTTGAGGATGATTATTTAGTAGCTGTTGGGGTGACATGGCAAGTTAGAGATTTGCTTCTGCAAGAAGATACCAGAAAAGCTATTTTGGAATCTCCGAGTTTAGAGATGTCGTTTGTTTCTCTTAAGGTGATTTCTGAGGTCAGCATTATGCATTGCGGGCACCACGAATACATAGACATATGTCCTGTTTTGGCATATGTTGCCTTTGCTGTCCAAATGACTAATATCTTGGAGCTGACAATAGAGCATGTGCTCAACTGTTTAGAAAAACTATTTGGAGCTGGTGGCATCATGAAAAATCATGATGGGGATTCATGTAATTTTCAGCCTACCAATAGAACAAATCAAAATCAAAATTCCAGACAAAGGCCGAGACTATCTCCTACAGATGCATGTCGCCCTAGTAACTGA
>Glyma08g26621.1 sequence type=predicted peptide gene model=Glyma08g26621 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high KSMLEAYGDILFWAWPAAQGDSRTEIKNGFLQEMIEAAIHASFGAFASYIMRVLEAFINHRTTDGVEKILYRLAEPVIFRSLQVANSNVCQNTLHLLLDMFPLEDPDATNEEKDTLLDKQYDCLEVRTIVVEGSCRILHLFWEVIPSLIITKMITKIVDDISHDGCNEVRLSMLNGIIYLLGNPQSHEILKVLLPRLRHLMLDKVLAIRVAAVDLLLHLKDVRDFQFNKAVELDVLLSVLTSDQPPVAQKITKLLLPSHFPSKVPIEEACNRCVTLVKRAPMAGARFFQFAILERASKSHLMELVKVFLSLILSPDKLDANQINGFLVATSYVCDSLACEPCYKNALKELLDGEKMKGQAQSSLFNIFSNVCPDDVARLLEECMGVVTNCSGLPEDVDRQIEIRSAHKLLLSLGGFDDLIEALTASLHKVAYRCHIKFGVDMPSHSVSFAKRKKSKSSGKFSIKSKIINRKQSFEDDYLVAVGVTWQVRDLLLQEDTRKAILESPSLEMSFVSLKVISEVSIMHCGHHEYIDICPVLAYVAFAVQMTNILELTIEHVLNCLEKLFGAGGIMKNHDGDSCNFQPTNRTNQNQNSRQRPRLSPTDACRPSN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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