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Report for Sequence Feature Glyma08g26530

Feature Type:gene_model
Chromosome:Gm08
Start:20866867
stop:20870622
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g26530
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15510AT Annotation by Michelle Graham. TAIR10: TPX2 (targeting protein for Xklp2) protein family | chr5:5034120-5036614 FORWARD LENGTH=497 SoyBaseE_val: 2.00E-153ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0016458GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing SoyBaseN/AISS
GO:0034968GO-bp Annotation by Michelle Graham. GO Biological Process: histone lysine methylation SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR14326Panther TARGETING PROTEIN FOR XKLP2 JGI ISS
PTHR14326:SF10Panther JGI ISS
PF06886PFAM Targeting protein for Xklp2 (TPX2) JGI ISS
UniRef100_F4K9T9UniRef Annotation by Michelle Graham. Most informative UniRef hit: TPX2 (Targeting protein for Xklp2) family protein n=1 Tax=Arabidopsis thaliana RepID=F4K9T9_ARATH SoyBaseE_val: 8.00E-151ISS
UniRef100_UPI00023390B8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023390B8 related cluster n=1 Tax=unknown RepID=UPI00023390B8 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g26530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g26530
ParalogEvidenceComments
Glyma18g50010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g26530 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g243100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g26530
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g26530
>Glyma08g26530.1   sequence type=CDS   gene model=Glyma08g26530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCCGTAGCATCATCACCGACGCCACGTAAGTCTCGATCCAAAAACCTCGAGAATTTCGATCCCAACAAACAACAACAAAGCCCTGTTTTCAAACCCTCTTGTTCCTCTTCTTCTTCTCCTCTCGTGAAACCAAAGAACCCTAATAATAAAGTCAAGTACTTCTCCCCTCAGAACAAGATCCGGCAGAGAAAGTTCTTGGTCGCAAAGAAGAAGAAAGAGACGAAGAAGGAAGAAAAAGAGGGTTCGGGTGCTGCTGACTCTTGCAAGTGCAAAGCAACTGGTGCAAATGCCAACAAGAACCACAAGTGTGTCTGTGTGGCTTATAACAACCTAAGGAAGTCCCAGGAAGAGTTCTTCAAGAACAAAGATGATGGTGTTGTTGAAGAAGGGGGTTTTGAGAGTGAGACTGAGAGTGTGGTTGTTGAAGAAGAAAAAGAAGGAGAATCATTATTGGGGAATGGTTTGGTTGTGAAGCGTAGGAGGGAGAGGTTGATGGAAGAAGCGAGGAAGAGTGTTCCACAAAGTGGGTCTGGGAAAGTTATGCATTTGGTGAAGGCATTTGAGAAGCTTCTCTCAATTCCCAAAACCGAGGAAGAAGAAGATGAGGAGGAGGGATCTAAATATCAAGAGAAGGATGATAACAAGATGGTGGGGAAATGGGCACTGCCAGGGTTGCAGCAACACGATTCTGAGGTTTCATTTTGCCCACCAAACTGTGTCCTCACATTGCAAAACCTCGGCTTGGATCCTGGGGCATCAGTTTCGGCTTCGTGGGATAGCAGCCGTGCAAGTGTGTCTAGCAGGACTTCTACTGGGGGTCGAAGAAGCAGGAGAAATAGCCTGGAATCATCAAGTACTTTTGGGAGAAGAAGGTTGAAAAAGAAGCAGCAGAAAGTGACTAGCCAGAAGCCATTCAAGCTAAGAACTGAGCAAAGGGGCAAGTTAAAAGAAGAAGAATTTGTAAAGAAGATACAAGAGATGGCAGCAGTAGAAGAGAAGCAAAGGATACCTGTTGCACAGGGTCTTCCTTGGACAACAGATGAACCAGAGTGCTTGGTTAAGCCTCCGGTGAAAGATATCACAAGGCCTGTTGACCTGAAACTTCACAGTGATGTGCGGGCATTAGATCGTGCTGAGTTTGATCATCAGGTGCAAGAAAAATTGAGCTTAATAGAGCAATACAAATTGGAAAGGGAGAGACAACAGAAGTTGGCAGAAGAAGAAGAACTAAGAAGGTTGAGGAAGGAACTAGTACCAAAAGCACAACCCATGCCATATTTTGATAGACCTTTTATTCCAATGAGGTCAATGAAGAATCCAACTATACCTAGAGAACCCAAGTTTCATAATCATAAGAAGATCAAGTGCAGCTTATCATCATGGAACGATATGAGCCCGTACTCCTCCAGCTGCCTTAACTAA
Predicted protein sequences of Glyma08g26530
>Glyma08g26530.1   sequence type=predicted peptide   gene model=Glyma08g26530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAVASSPTPRKSRSKNLENFDPNKQQQSPVFKPSCSSSSSPLVKPKNPNNKVKYFSPQNKIRQRKFLVAKKKKETKKEEKEGSGAADSCKCKATGANANKNHKCVCVAYNNLRKSQEEFFKNKDDGVVEEGGFESETESVVVEEEKEGESLLGNGLVVKRRRERLMEEARKSVPQSGSGKVMHLVKAFEKLLSIPKTEEEEDEEEGSKYQEKDDNKMVGKWALPGLQQHDSEVSFCPPNCVLTLQNLGLDPGASVSASWDSSRASVSSRTSTGGRRSRRNSLESSSTFGRRRLKKKQQKVTSQKPFKLRTEQRGKLKEEEFVKKIQEMAAVEEKQRIPVAQGLPWTTDEPECLVKPPVKDITRPVDLKLHSDVRALDRAEFDHQVQEKLSLIEQYKLERERQQKLAEEEELRRLRKELVPKAQPMPYFDRPFIPMRSMKNPTIPREPKFHNHKKIKCSLSSWNDMSPYSSSCLN*






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