Report for Sequence Feature Glyma08g26520
Feature Type: gene_model
Chromosome: Gm08
Start: 20855111
stop: 20858024
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g26520
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G15490 AT
Annotation by Michelle Graham. TAIR10: UDP-glucose 6-dehydrogenase family protein | chr5:5027872-5029314 REVERSE LENGTH=480
SoyBase E_val: 0 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0042732 GO-bp
Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process
SoyBase N/A ISS
GO:0052546 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003979 GO-mf
Annotation by Michelle Graham. GO Molecular Function: UDP-glucose 6-dehydrogenase activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0016616 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
SoyBase N/A ISS
GO:0050662 GO-mf
Annotation by Michelle Graham. GO Molecular Function: coenzyme binding
SoyBase N/A ISS
GO:0051287 GO-mf
Annotation by Michelle Graham. GO Molecular Function: NAD binding
SoyBase N/A ISS
KOG2666
KOG
UDP-glucose/GDP-mannose dehydrogenase
JGI ISS
PTHR11374 Panther
UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE
JGI ISS
PF00984 PFAM
UDP-glucose/GDP-mannose dehydrogenase family, central domain
JGI ISS
PF03720 PFAM
UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
JGI ISS
PF03721 PFAM
UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
JGI ISS
UniRef100_Q96558 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose 6-dehydrogenase n=1 Tax=Glycine max RepID=UGDH_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q96558 UniRef
Annotation by Michelle Graham. Best UniRef hit: UDP-glucose 6-dehydrogenase n=1 Tax=Glycine max RepID=UGDH_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g26520
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g26520
Paralog Evidence Comments
Glyma18g50000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g26520 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g243000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g26520
Coding sequences of Glyma08g26520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g26520.1 sequence type=CDS gene model=Glyma08g26520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGAAGATTTGCTGCATTGGTGCTGGATATGTGGGGGGTCCTACTATGGCAGTCATTGCACTTAAGTGCCCATCCATTGAAGTCGCTGTTGTTGATATCTCTAAATCCCGCATTGCAGCCTGGAACAGCGACCAGCTTCCTATCTATGAACCTGGCCTTGATGGTGTTGTGAAGCAATGCCGTGGCAAGAACCTCTTCTTCAGCACTGATGTTGAAAAGCATGTCTTTGAGGCTGACATAGTGTTTGTCTCTGTCAACACCCCAACCAAAACTCAGGGTCTTGGAGCTGGCAAAGCAGCAGATTTGACATATTGGGAGAGTGCAGCTCGCATGATTGCTGATGTCTCGAAGTCTGACAAGATCGTGGTGGAGAAATCCACAGTCCCTGTCAAAACTGCTGAAGCCATAGAGAAGATTCTGACCCACAATAGCAAGGGAATCAAATTCCAGATTCTATCAAACCCTGAATTCCTTGCAGAGGGAACTGCAATCAAAGATCTCTTTAACCCAGACCGTGTTCTTATTGGAGGCAGGGAAACCCCAGAGGGCCAAAAAGCTATTCAAACATTGAAGGATGTTTATGCTCAATGGGTCCCCGAAGAAAGAATACTGACCACAAATCTTTGGTCGGCAGAACTGTCTAAGCTTGCTGCTAATGCCTTCTTAGCACAAAGGATTTCATCTGTCAATGCCATGTCAGCACTTTGTGAGGCTACTGGGGCAAACGTTCAACAGGTGTCCTATTCTGTTGGTACAGACTCAAGGATTGGACCCAAGTTTCTCAATGCCAGTGTTGGTTTTGGTGGATCCTGCTTCCAGAAGGATATCTTGAACCTTGTTTACATCTGTGAGTGCAATGGCCTTCCAGAGGTGGCTGAGTATTGGAAACAAGTGATCAAGATCAATGATTATCAGAAGAGCCGATTTGTGAACCGTGTTGTTGCATCAATGTTCAACACAGTTTCAAACAAAAAGATTGCTATTCTGGGATTTGCCTTCAAGAAAGACACTGGTGACACAAGGGAGACTCCTGCCATTGATGTATGCCAGGGGCTACTAGGTGATAAGGCCAACCTGAGCATATACGACCCGCAAGTAACCGAGGACCAAATCCAGAGGGATCTATCCATGAACAAGTTTGATTGGGATCATCCTATCCACTTGCAGCCCACAAGTCCTACTACTGTGAAGAAGGTCAGTGTTGTTTGGGATGCCTATGAAGCAACAAAGGATGCACATGGCCTTTGCATTCTAACCGAGTGGGATGAGTTCAAGACTCTTGATTACCAGAAGATATTTGACAACATGCAAAAACCAGCATTTGTTTTTGATGGCAGAAACATTGTGGATGCTGATAAGTTGCGTGAGATTGGCTTCATAGTTTACTCAATTGGTAAGCCACTGGACCCATGGCTCAAAGACATGCCTGCTGTGGCATAA
Predicted protein sequences of Glyma08g26520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g26520.1 sequence type=predicted peptide gene model=Glyma08g26520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
