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Report for Sequence Feature Glyma08g26510

Feature Type:gene_model
Chromosome:Gm08
Start:20835234
stop:20837784
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g26510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61190AT Annotation by Michelle Graham. TAIR10: putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain | chr5:24615480-24619886 FORWARD LENGTH=995 SoyBaseE_val: 6.00E-17ISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR23067Panther DOUBLE-STRANDED RNA-BINDING ZINC FINGER PROTEIN JGI ISS
PTHR23067:SF18Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_I1KWC9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWC9_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q7XFT9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XFT9_ORYSJ SoyBaseE_val: 2.00E-35ISS

Expression Patterns of Glyma08g26510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g26510
ParalogEvidenceComments
Glyma18g49990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g26510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g242800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g26510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g26510
>Glyma08g26510.1   sequence type=CDS   gene model=Glyma08g26510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATACAGCAATTGGGCTGAATCGCTTCAAACCGAAACCCCACTCCCCTCTTTCCCACAACCCTCATCCTCATATCCTCCTACCTATTACCCCTCTTACCCTCAAAACCCTAACCCCTCTTCTTCTTCTTCTTCTTCTTCTCTTCCCATCAACCCTCCCGGGGTTGATCCCCAAACACCATTGAACCCTATTAGCTATGCGGCTCATGAACCCGTTCCCGCTTTGATCTACGCTCAGAGACTTGTTGGGGATAATTCGTCTTCTGGGTATTGCTTGGACCAGAATTGGGCTGCTAGAGATGCTGTTAGGCAATTTGGTACTGACCCTACTCTCTATGCACCTGGCATCTCTTTGCCATCCAATGGCTCAGAACAGTTGGCTATGGCAAATCCTAGTAGCTCTCTGTGGTGGACAAATACCACAACTCTACCTCATGTCAATGGAATACTGAAGAAAAACCAAAAGAAAGCTAAAACTAAGATTGTGCAACCTGCATTTTGTGAAGTTTGCAAGATAGAATGCACCAGCAAGGACGTTTTGGACCAGCATAAATTAGGAAAGAAGCACAAGAAGAACGTGGAGAAATTAAGGGAATCATTGACACCTACCCAAGTTCAACCATCTGTGTCATCTAAGCCTTTAATAGGACCCCAATTACCGGATGATAAGAGCAAGTCCACAAGTGGGAATAAGAGTAAGAGAAAAAAAGTTGAAACTGCAGAGGATTTGGAGAAAAAGAAAATGAAAGTTCTTGAGGGTGGGGCAGCAGCTTCAGCAGTTAAGATATGTGCTATATGTAACGTGGTGTGTAATAGTGAGACAGTTTATAACTATCATCTTGCAGGACAAAAGCATGCTGCTATGCTGAAGAAAGCATCGGGCCATATGCAATCCAGTGCCAGTTGA
Predicted protein sequences of Glyma08g26510
>Glyma08g26510.1   sequence type=predicted peptide   gene model=Glyma08g26510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYSNWAESLQTETPLPSFPQPSSSYPPTYYPSYPQNPNPSSSSSSSSLPINPPGVDPQTPLNPISYAAHEPVPALIYAQRLVGDNSSSGYCLDQNWAARDAVRQFGTDPTLYAPGISLPSNGSEQLAMANPSSSLWWTNTTTLPHVNGILKKNQKKAKTKIVQPAFCEVCKIECTSKDVLDQHKLGKKHKKNVEKLRESLTPTQVQPSVSSKPLIGPQLPDDKSKSTSGNKSKRKKVETAEDLEKKKMKVLEGGAAASAVKICAICNVVCNSETVYNYHLAGQKHAAMLKKASGHMQSSAS*






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