Glyma08g26460 - SoyBase

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Report for Sequence Feature Glyma08g26460

Feature Type:	gene_model
Chromosome:	Gm08
Start:	20799554
stop:	20801131
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g26460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13810	AT	Annotation by Michelle Graham. TAIR10: indeterminate(ID)-domain 11 \| chr3:4544941-4547300 FORWARD LENGTH=513	SoyBase	E_val: 6.00E-13	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
UniRef100_G7LHG9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Medicago truncatula RepID=G7LHG9_MEDTR	SoyBase	E_val: 1.00E-17	ISS
UniRef100_I1KUT5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUT5_SOYBN	SoyBase	E_val: 4.00E-24	ISS

Expression Patterns of Glyma08g26460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g26460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g242400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g26460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g26460

Limit To All Plant Sequences

>Glyma08g26460.1   sequence type=CDS   gene model=Glyma08g26460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATGAAGGGTTTTATGTTCCAGCACCAACAGCAGCAGCAAGTAGGCGTGGAGGAAAACATCTGCAATTTGACTTCTGCATCTGGTGAAGCAAGTGCTGCTTCCTCAGGTAACAAAACTGAAATTGGAACCAATTACATGGCTCCACCACCATCTCAAACTCAACAACCAAAGAAAAAGAGAAACCTACTTGGCAACCCGGGTTTTTTCTTCCTATTTTTTTTCCTATTCAAACCTTGTCCCCCAAGAGTCTTCTTGCCACAAACAGGTTCATTTGTGACATCTGTAACAAAGAATTTCAAAGAGATAAGAACCTTTCGTTTCATTTTTAGAGGGCACAATTTTCCCTGGAAACTGAAATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGCAAATGTCACTAGTGCTCCAAGAAGTATGCCGTTCAATCAGATTGGAAAGCTCACTCCAAATCCTGTGGCACTAGGGAGTACACATGTGACTGTCAAACCCACTTCTCAAGGAAGAATAAGGAAGAACAAGGGCAAAGTTGTAGGTTTGACACGAGTAAAGTGCCAAGAAGGTTGTCACTTTCTGACATTAAGTATACTACAATGGAGTTCAATCGAGATAGGCTTGTTGGGGAGGTTCAATTGTGCTGGACAATTGTTTGTCTATGGTGGCAATGAAATTGGATTTGAAGAAGTGTTGTTAAATTGGTTTTATTGGCAGTTGCTACTGAAATCATATAAACTGTGCATATCACTCTATAATATGTGA

Predicted protein sequences of Glyma08g26460

Limit To All Plant Sequences

>Glyma08g26460.1   sequence type=predicted peptide   gene model=Glyma08g26460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMKGFMFQHQQQQQVGVEENICNLTSASGEASAASSGNKTEIGTNYMAPPPSQTQQPKKKRNLLGNPGFFFLFFFLFKPCPPRVFLPQTGSFVTSVTKNFKEIRTFRFIFRGHNFPWKLKSRSTSAESTVRRSANVTSAPRSMPFNQIGKLTPNPVALGSTHVTVKPTSQGRIRKNKGKVVGLTRVKCQEGCHFLTLSILQWSSIEIGLLGRFNCAGQLFVYGGNEIGFEEVLLNWFYWQLLLKSYKLCISLYNM*

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