Glyma08g26390 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g26390

Feature Type:	gene_model
Chromosome:	Gm08
Start:	20716155
stop:	20719700
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g26390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39380	AT	Annotation by Michelle Graham. TAIR10: Plant calmodulin-binding protein-related \| chr5:15759163-15760686 REVERSE LENGTH=507	SoyBase	E_val: 2.00E-12	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF07839	PFAM	Plant calmodulin-binding domain	JGI		ISS
UniRef100_I1KWC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KWC0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FLZ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding protein-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9FLZ6_ARATH	SoyBase	E_val: 1.00E-09	ISS

Expression Patterns of Glyma08g26390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g26390

Paralog	Evidence	Comments
Glyma18g49911	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g26390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g241800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g26390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g26390

Limit To All Plant Sequences

>Glyma08g26390.1   sequence type=CDS   gene model=Glyma08g26390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAGGAAAGTGTTGATTTACCACTGATTCCAAAAGTAACTATGTCAAGTGGGGTTGCATTAAGAAGGCACTCAGCGGGAATAGCAAATTCTGGAAATAATGAAAAAAAACTTGTCCCTCATTATCTCAGAGCATCTACTGGCTCCTGTCATGATTTTTGTAAATATGGGAGGAAGAATGTGGAAGAAGCAAGGGAGAAACTCTCCATTATTAAGAGAGCTGGAAGAAAATCACTTTCCCGAAGTTCAGAAGACATTATTGATGGGATAATGACATCAGTTGCCAAGCAAAAAACATCTCTTGATTCCACGTCAACAAAGATGTCAACAGTGAAACATAGTGAATCAGTTGGCACAAATAAGATGGAACTCCCAACAAAATCATCTGGCAGCCAAAAACAAATGGGGAATAAAGTTCTAGTGAACACAAGCAAGGCATCATTGGTCAGTGTCAAACCATCATTCCTTCCAAAATCACATATTTCTTCAATCCCCGAAGCAAGGAGAGGGGGGATTTCTTTAAGTTTTGAGGTGGAAGCTCTATCAAAACCAACTTCCAAAAGGGTGGAAGCTTCACCAACAGAAACTTCTGAGAGGGTGAAAACTCATCCTAAATCAACTTCCCAAATTGTCAAAACTTCACCAAAATCCATGTTCAAGAAGAAGCAAACTTTAAAGGTGTCTCCTTTTGAAGAAAAAGAAATGGAGTTGTCTGATAAACATGTGACTTCTTTGAATCCAGATTTCATCACAAAGCAGACCATATCTTCTGTGAATTCTTCTGATGTCTTTGGCGGCCAAAGGAATAGTAAGATTAAGATGAACAAGAAAGAAGTCTCCTCCAAATCTTCTTCCAGAGGAATTGGAAGTGTTAGTGCAAGAAAGCACAAGGGCCTGAAAATTGTGCCTCATCTTATGAATCAACCCAAGCCTATAAAAGTTGAACTTGAGGAACACAACAATGAGGCTCAGGAAAAGACTTTGTACATCATCAAGATGGAAAGTACAAAGCAAAGTTCGCACTCTGATCAAAATGAAAGCCAGGATATTGAAGACCAAGAGGAATCTGAATACTCAAATAGTGAATTTGAGGAGGATGCTTGTCCAGAAAACCATGAAATTGAATACATGGCTAATGTGGACACTTTGGAAGTTGAGAAGAATGGAAAGCCTCAAAATGATGAGATTGTTTGTTCTGAAGAGAAGGAGTGCCAACAGTTAGGGGGGAAATTGGTTGAAACTCAAATTGAATATATGGCTAATGTAGACACTTTTGAAGCTGAGAAGAATGGAAAGCCTCAAAAGGATGGAATTGTTTGTTCTGAAGACAAGGAGTGCCATAAATTAAGGGGAGAATTGGTTGAAACTCAAATTGAATACATGGCTAATGTGGACACTTTGGAAGCTGAGGAGAATGGAAAGCCTCAAAAGCATGGGATTAATTGTTCTGAAGCCAAGGAGTGCCAAAAATTAGGGGGAGAATTGCTTGAAACTCATATTGAAAAGGGTAGTCTGAGGAGCCTTGAAGTCCAGAAAGAAGTGTTGGGGGCCATCACTACTGATGTCAAGGCCGTTGCTATAACTGCTCCAGAGAAGGTTCTTTTGAGACATCAACATGTGCAGGTCAAGAAAGATGGACAAGGATTGTACAATAATGTGATTAAGGAAACAACTAAACATGTTGAAACTCAGAAGGGCAAGGTTAAAGCACTGATTGATGCCTTTGAAGCTGTAATCTCTCTTGAAGAGAAAAGTATTTCTGCTGCAAACATTGTCAATTGA

Predicted protein sequences of Glyma08g26390

Limit To All Plant Sequences

>Glyma08g26390.1   sequence type=predicted peptide   gene model=Glyma08g26390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKESVDLPLIPKVTMSSGVALRRHSAGIANSGNNEKKLVPHYLRASTGSCHDFCKYGRKNVEEAREKLSIIKRAGRKSLSRSSEDIIDGIMTSVAKQKTSLDSTSTKMSTVKHSESVGTNKMELPTKSSGSQKQMGNKVLVNTSKASLVSVKPSFLPKSHISSIPEARRGGISLSFEVEALSKPTSKRVEASPTETSERVKTHPKSTSQIVKTSPKSMFKKKQTLKVSPFEEKEMELSDKHVTSLNPDFITKQTISSVNSSDVFGGQRNSKIKMNKKEVSSKSSSRGIGSVSARKHKGLKIVPHLMNQPKPIKVELEEHNNEAQEKTLYIIKMESTKQSSHSDQNESQDIEDQEESEYSNSEFEEDACPENHEIEYMANVDTLEVEKNGKPQNDEIVCSEEKECQQLGGKLVETQIEYMANVDTFEAEKNGKPQKDGIVCSEDKECHKLRGELVETQIEYMANVDTLEAEENGKPQKHGINCSEAKECQKLGGELLETHIEKGSLRSLEVQKEVLGAITTDVKAVAITAPEKVLLRHQHVQVKKDGQGLYNNVIKETTKHVETQKGKVKALIDAFEAVISLEEKSISAANIVN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain