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Report for Sequence Feature Glyma08g26123

Feature Type:gene_model
Chromosome:Gm08
Start:20494116
stop:20494622
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g26123
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G22540AT Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr1:7964202-7966222 FORWARD LENGTH=557 SoyBaseE_val: 2.00E-42ISS
GO:0006857GO-bp Annotation by Michelle Graham. GO Biological Process: oligopeptide transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
PTHR11654Panther OLIGOPEPTIDE TRANSPORTER-RELATED JGI ISS
PTHR11654:SF37Panther OLIGOPEPTIDE TRANSPORTER-RELATED JGI ISS
PF00854PFAM POT family JGI ISS
UniRef100_D7KLS9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Proton-dependent oligopeptide transport family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KLS9_ARALL SoyBaseE_val: 7.00E-42ISS
UniRef100_UPI0002338F42UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338F42 related cluster n=1 Tax=unknown RepID=UPI0002338F42 SoyBaseE_val: 6.00E-65ISS

Expression Patterns of Glyma08g26123
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g26123 not represented in the dataset
Glyma08g26123 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g26123 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g239600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g26123
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g26123
>Glyma08g26123.1   sequence type=CDS   gene model=Glyma08g26123   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCAAATCATGCTCTACCTCAATCGCAAATAATTTTGTTCTTTATCTCTCTTTATTTGGTCGCAATTGGCCAAGGTGGACATAAGCCCTGTGTTCAGGCTTTTGGAGCAGATCAATTCGATGAAAAACATCCAAAGGAGTACAAAGATAGAAGCTCTTTCTTTAATTGGTGGTATTTTACTATGTGTGCAGGTTGCATGGCAACTCTTTGGATCTTGAACTATATACAAGACAACCCAAGTTGGGTTCTTGGATTTGGAATTCCTCGTGTCGCCATGATTATTGCATTGCTTGGAACAATGACCTAA
Predicted protein sequences of Glyma08g26123
>Glyma08g26123.1   sequence type=predicted peptide   gene model=Glyma08g26123   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSNHALPQSQIILFFISLYLVAIGQGGHKPCVQAFGADQFDEKHPKEYKDRSSFFNWWYFTMCAGCMATLWILNYIQDNPSWVLGFGIPRVAMIIALLGTMT*






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