Glyma08g26070 - SoyBase

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Report for Sequence Feature Glyma08g26070

Feature Type:	gene_model
Chromosome:	Gm08
Start:	20445938
stop:	20446889
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g26070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22630	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). \| chr1:8003487-8004167 FORWARD LENGTH=110	SoyBase	E_val: 7.00E-39	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
UniRef100_I1KW91	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KW91_SOYBN	SoyBase	E_val: 3.00E-70	ISS

Expression Patterns of Glyma08g26070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g26070 not represented in the dataset	Glyma08g26070 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g26070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g239000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g26070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g26070

Limit To All Plant Sequences

>Glyma08g26070.2   sequence type=transcript   gene model=Glyma08g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCCTTGTTAGTTGTTATATTGTTATCCATCCTATTCCTATCCACTTGAGGAAGAAATGCATCATATCTGTGTTTGCTGCAAGGGCTTGACTCCTCTACCTCCTCCTCCTCCTCCGCTTCACCAAAGACGAAACACTCTAGTCATTACTTTTGCTTCAAAGTCTGGAGGAGGATTTTCACTTAACTCGTTACTGAAAAGTTGTAAAAGTTGCGGAGGAAAGGGGGCAATTGAATGTCCTGGATGTAAGGTGCCATGCCATGAAATTCATTTTCAAGGTTCTGTTGTTTTGTTTCTTTATTATTAAGAAGATAAAATGATTTAAAAGCTAGTTATTTTGGAGCTTGGCAGGGGACGGGAAAGAATAAAAAGAACGGAAATATATTTGAACGGTGGAAATGTTTTGATTGCCAAGGATTTGGGCTAAAGAGCTGTCCCAGCTGCGGAAAGGAAGGCTTAACACCCGAACAAAGAGGAGAAAGATAGGACTAAGGATTCAAACTTGCACTTTTCTCTCAATTGATCAACCCCTTACCCCTTTATGCAATCTTATACTTACGATATAAATAGAGGTCATATGCATCTTTTTGAAACTTTGATAATTTGAATATTAAACTTCAGATTTTAGAGTTCTTTTAGAGCACAAAATTTCGTATTCCTCCCGGTCTTTATGTTGAAAACTCTCTTTGTATGTTGAAACTTTAAAACTGATACCCTTCATGTGACTTATATAGTTTTGATTATAAAATATTATTAAAAGTATCCAACTTACTGCACTTAAATTT

>Glyma08g26070.3   sequence type=transcript   gene model=Glyma08g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCCTTGTTAGTTGTTATATTGTTATCCATCCTATTCCTATCCACTTGAGGAAGAAATGCATCATATCTGTGTTTGCTGCAAGGGCTTGACTCCTCTACCTCCTCCTCCTCCTCCGCTTCACCAAAGACGAAACACTCTAGTCATTACTTTTGCTTCAAAGTCTGGAGGAGGATTTTCACTTAACTCGTTACTGAAAAGTTGTAAAAGTTGCGGAGGAAAGGGGGCAATTGAATGTCCTGGATGGGACGGGAAAGAATAAAAAGAACGGAAATATATTTGAACGGTGGAAATGTTTTGATTGCCAAGGATTTGGGCTAAAGAGCTGTCCCAGCTGCGGAAAGGAAGGCTTAACACCCGAACAAAGAGGAGAAAGATAGGACTAAGGATTCAAACTTGCACTTTTCTCTCAATTGATCAACCCCTTACCCCTTTATGCAATCTTATACTTACGATATAAATAGAGGTCATATGCATCTTTTTGAAACTTTGATAATTTGAATATTAAACTTCAGATTTTAGAGTTCTTTTAGAGCACAAAATTTCGTATTCCTCCCGGTCTTTATGTTGAAAACTCTCTTTGTATGTTGAAACTTTAAAACTGATACCCTTCATGTGACTTATATAGTTTTGATTATAAAATATTATTAAAAGTATCCAACTTACTGCACTTAAATTT

>Glyma08g26070.4   sequence type=transcript   gene model=Glyma08g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCCTTGTTAGTTGTTATATTGTTATCCATCCTATTCCTATCCACTTGAGGAAGAAATGCATCATATCTGTGTTTGCTGCAAGGGCTTGACTCCTCTACCTCCTCCTCCTCCTCCGCTTCACCAAAGACGAAACACTCTAGTCATTACTTTTGCTTCAAAGTCTGGAGGAGGATTTTCACTTAACTCGTTACTGAAAAGTTGTAAAAGTTGCGGAGGAAAGGGGGCAATTGAATGTCCTGGATTTATTTTGGAGCTTGGCAGGGGACGGGAAAGAATAAAAAGAACGGAAATATATTTGAACGGTGGAAATGTTTTGATTGCCAAGGATTTGGGCTAAAGAGCTGTCCCAGCTGCGGAAAGGAAGGCTTAACACCCGAACAAAGAGGAGAAAGATAGGACTAAGGATTCAAACTTGCACTTTTCTCTCAATTGATCAACCCCTTACCCCTTTATGCAATCTTATACTTACGATATAAATAGAGGTCATATGCATCTTTTTGAAACTTTGATAATTTGAATATTAAACTTCAGATTTTAGAGTTCTTTTAGAGCACAAAATTTCGTATTCCTCCCGGTCTTTATGTTGAAAACTCTCTTTGTATGTTGAAACTTTAAAACTGATACCCTTCATGTGACTTATATAGTTTTGATTATAAAATATTATTAAAAGTATCCAACTTACTGCACTTAAATTT

Coding sequences of Glyma08g26070

Limit To All Plant Sequences

>Glyma08g26070.1   sequence type=CDS   gene model=Glyma08g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCATATCTGTGTTTGCTGCAAGGGCTTGACTCCTCTACCTCCTCCTCCTCCTCCGCTTCACCAAAGACGAAACACTCTAGTCATTACTTTTGCTTCAAAGTCTGGAGGAGGATTTTCACTTAACTCGTTACTGAAAAGTTGTAAAAGTTGCGGAGGAAAGGGGGCAATTGAATGTCCTGGATGTAAGGGGACGGGAAAGAATAAAAAGAACGGAAATATATTTGAACGGTGGAAATGTTTTGATTGCCAAGGATTTGGGCTAAAGAGCTGTCCCAGCTGCGGAAAGGAAGGCTTAACACCCGAACAAAGAGGAGAAAGATAG

>Glyma08g26070.2   sequence type=CDS   gene model=Glyma08g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCATATCTGTGTTTGCTGCAAGGGCTTGACTCCTCTACCTCCTCCTCCTCCTCCGCTTCACCAAAGACGAAACACTCTAGTCATTACTTTTGCTTCAAAGTCTGGAGGAGGATTTTCACTTAACTCGTTACTGAAAAGTTGTAAAAGTTGCGGAGGAAAGGGGGCAATTGAATGTCCTGGATGTAAGGTGCCATGCCATGAAATTCATTTTCAAGGTTCTGTTGTTTTGTTTCTTTATTATTAA

>Glyma08g26070.3   sequence type=CDS   gene model=Glyma08g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCATATCTGTGTTTGCTGCAAGGGCTTGACTCCTCTACCTCCTCCTCCTCCTCCGCTTCACCAAAGACGAAACACTCTAGTCATTACTTTTGCTTCAAAGTCTGGAGGAGGATTTTCACTTAACTCGTTACTGAAAAGTTGTAAAAGTTGCGGAGGAAAGGGGGCAATTGAATGTCCTGGATGGGACGGGAAAGAATAA

>Glyma08g26070.4   sequence type=CDS   gene model=Glyma08g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCATATCTGTGTTTGCTGCAAGGGCTTGACTCCTCTACCTCCTCCTCCTCCTCCGCTTCACCAAAGACGAAACACTCTAGTCATTACTTTTGCTTCAAAGTCTGGAGGAGGATTTTCACTTAACTCGTTACTGAAAAGTTGTAAAAGTTGCGGAGGAAAGGGGGCAATTGAATGTCCTGGATTTATTTTGGAGCTTGGCAGGGGACGGGAAAGAATAAAAAGAACGGAAATATATTTGAACGGTGGAAATGTTTTGATTGCCAAGGATTTGGGCTAA

Predicted protein sequences of Glyma08g26070

Limit To All Plant Sequences

>Glyma08g26070.1   sequence type=predicted peptide   gene model=Glyma08g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHHICVCCKGLTPLPPPPPPLHQRRNTLVITFASKSGGGFSLNSLLKSCKSCGGKGAIECPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPSCGKEGLTPEQRGER*

>Glyma08g26070.2   sequence type=predicted peptide   gene model=Glyma08g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHHICVCCKGLTPLPPPPPPLHQRRNTLVITFASKSGGGFSLNSLLKSCKSCGGKGAIECPGCKVPCHEIHFQGSVVLFLYY*

>Glyma08g26070.3   sequence type=predicted peptide   gene model=Glyma08g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHHICVCCKGLTPLPPPPPPLHQRRNTLVITFASKSGGGFSLNSLLKSCKSCGGKGAIECPGWDGKE*

>Glyma08g26070.4   sequence type=predicted peptide   gene model=Glyma08g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHHICVCCKGLTPLPPPPPPLHQRRNTLVITFASKSGGGFSLNSLLKSCKSCGGKGAIECPGFILELGRGRERIKRTEIYLNGGNVLIAKDLG*

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