Glyma08g26020 - SoyBase

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Report for Sequence Feature Glyma08g26020

Feature Type:	gene_model
Chromosome:	Gm08
Start:	20413038
stop:	20414184
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g26020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G09350	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr4:5931317-5932152 REVERSE LENGTH=249	SoyBase	E_val: 9.00E-101	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
PTHR24077	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24077:SF97	Panther		JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_D7LX90	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNAJ heat shock N-terminal domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LX90_ARALL	SoyBase	E_val: 2.00E-100	ISS
UniRef100_I1KW87	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KW87_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g26020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g26020

Paralog	Evidence	Comments
Glyma12g00300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g26020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g238600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g26020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g26020

Limit To All Plant Sequences

>Glyma08g26020.1   sequence type=CDS   gene model=Glyma08g26020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGTATTGTGATATTACCGTTCTGTTCTCCCATGGCTTTCGCAGCAGCTCCTCTTATCCAGGTTGTATTATACGGAAATCCCAAGTTTTTGTTTTTGAGGAGTACTGCTCGTTGCACGGTCCACGCCTCTCGCAGACCACCACCCCCTGGGCCTGGAGTTGACACCAGAATCCATTGGGAAAACGAAGATGAAGGTTGGATTGGAGCTACCAATACCAAACACCAACAGACCCACAAACCCAATAACAACATGTTACAGGCTGATGACTTTCCTGATTTCCTCACCGCTTCTTTAGGTTCTCATTACGAATTCTTGGGTGTATCACCAGATGCGGATGTAGAAGAAATTAAAGTTGCTTATCGGAAATTGTCAAAGGAGTATCATCCCGACACAACTTCCCTGCCTCTCAAAACTGCCTCAGAAAAATTCATGAAATTAAGAGAGGTTTACAACGTTCTTAGCAATGAAGAGAGTCGAAAGTTTTATGATTGGACCCTTGCTCAAGAGGCTGCAAGCCGCCACGCAGAGAAGATGAAAATGAAATTAGAAGATCCTCGCCAGCAACAACTCAAGAACTGGGAACCTGTTCCAGACATGGTTGACCGCCTTGGTGGAAGGAATATGAAGCTTAGTGATCAGGCAGTTTCGGCCATCACCATTGATCTCTTTATCATTGTTTTTGCCCTATGTTGTATCATATATGTTATTTTCTTTAAAGAACCCTATTACTATTAG

Predicted protein sequences of Glyma08g26020

Limit To All Plant Sequences

>Glyma08g26020.1   sequence type=predicted peptide   gene model=Glyma08g26020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGIVILPFCSPMAFAAAPLIQVVLYGNPKFLFLRSTARCTVHASRRPPPPGPGVDTRIHWENEDEGWIGATNTKHQQTHKPNNNMLQADDFPDFLTASLGSHYEFLGVSPDADVEEIKVAYRKLSKEYHPDTTSLPLKTASEKFMKLREVYNVLSNEESRKFYDWTLAQEAASRHAEKMKMKLEDPRQQQLKNWEPVPDMVDRLGGRNMKLSDQAVSAITIDLFIIVFALCCIIYVIFFKEPYYY*

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