SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G22850 | AT | Annotation by Michelle Graham. TAIR10: SNARE associated Golgi protein family | chr1:8080671-8082816 REVERSE LENGTH=344 | SoyBase | E_val: 3.00E-124 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| KOG3140 | KOG | Predicted membrane protein | JGI | ISS | |
| PTHR12677 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF09335 | PFAM | SNARE associated Golgi protein | JGI | ISS | |
| UniRef100_G7JN89 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TVP38/TMEM64 family membrane protein slr0305 n=1 Tax=Medicago truncatula RepID=G7JN89_MEDTR | SoyBase | E_val: 1.00E-137 | ISS |
| UniRef100_I1KW83 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KW83_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g26000 not represented in the dataset |
Glyma08g26000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g238400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g26000.3 sequence type=CDS gene model=Glyma08g26000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGCACTCTCTCACTGCCATGCCTCTCTTATTCTCTTCACACTCACACTTACCAGTCTGGACGCTTCTCTCCCCCTTGTTCTTTTATCTTCACACCTCATAGACGCTCTCACAGTCACTTCCTGACTCCATGCTCCTCCCTCAGACAGAGAGAAAGAGAGAGCAAAAAGCAACTAGGCAAGATCAACACTGCCCCGTCTGAGTCTGGCTTGAAGCGCTTGTTTAGTCCCAATAACAACAAGACCGAAGTCGAAGGTGACGCCGACGCCGACGCCGACGCTGACCTCGACTTCCAGGATGGAACCGCCTTGAAGGGCACCCTCTTGGCCGGTCTCTTGCTCCTCGGTGTTGTTGGCGGTTTTGCCTCCGTTGGCTATATCTACAAGGACCAAGTCAATTCCTTCTTGAACCACCTCTCCGTCTTCATTGAAGGTTATGGTCCTGCTGGATATGCATTATTCGTTGCCGTTTATGCTGGATTGGAGATCCTTGCAATTCCTGCCATTCCTTTAACCATGTCAGCTGGACTTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACAGTGGCAGCCAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGAATTGTAAAACTAGTGGAAGGAAATAAGAAGTTTGTTGCTATTGACAAAGCAATTGGAGAAAATGGGTTCAGGGTTGTGACCCTGCTTCGTTTGAGCCCTCTGCTGCCATTTTCTTTGGGGAATTATTTATATGGATTAACATCTGTTAAGTTTATTCCATATGTATTGGGAAGTTGGTTGGGGATGCTTCCAGGAACATGGGCTTATGTCAGTGCTGGTGCTTTTGGAAGAGCAATAATTCAAGATGAATCTGAACTTAGTAATATATTTGGAGGAAACAGTCAGTTGCTAACACTGGGGCTGGGACTGTTGGCCACTGCATTAGCTGCTGCATATGTCACACGACTTGCAAAGGATGCTATAAAGGACATTGAATAG
>Glyma08g26000.3 sequence type=predicted peptide gene model=Glyma08g26000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCTLSLPCLSYSLHTHTYQSGRFSPPCSFIFTPHRRSHSHFLTPCSSLRQRERESKKQLGKINTAPSESGLKRLFSPNNNKTEVEGDADADADADLDFQDGTALKGTLLAGLLLLGVVGGFASVGYIYKDQVNSFLNHLSVFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVVGTIIVSISGTVAASVAFLIARYFARERIVKLVEGNKKFVAIDKAIGENGFRVVTLLRLSPLLPFSLGNYLYGLTSVKFIPYVLGSWLGMLPGTWAYVSAGAFGRAIIQDESELSNIFGGNSQLLTLGLGLLATALAAAYVTRLAKDAIKDIE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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