Report for Sequence Feature Glyma08g26000
Feature Type: gene_model
Chromosome: Gm08
Start: 20387281
stop: 20396875
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g26000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G22850 AT
Annotation by Michelle Graham. TAIR10: SNARE associated Golgi protein family | chr1:8080671-8082816 REVERSE LENGTH=344
SoyBase E_val: 3.00E-124 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0010264 GO-bp
Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
KOG3140
KOG
Predicted membrane protein
JGI ISS
PTHR12677 Panther
UNCHARACTERIZED
JGI ISS
PF09335 PFAM
SNARE associated Golgi protein
JGI ISS
UniRef100_G7JN89 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: TVP38/TMEM64 family membrane protein slr0305 n=1 Tax=Medicago truncatula RepID=G7JN89_MEDTR
SoyBase E_val: 1.00E-137 ISS
UniRef100_I1KW83 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KW83_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g26000
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma08g26000 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g238400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g26000
Coding sequences of Glyma08g26000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g26000.3 sequence type=CDS gene model=Glyma08g26000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTGCACTCTCTCACTGCCATGCCTCTCTTATTCTCTTCACACTCACACTTACCAGTCTGGACGCTTCTCTCCCCCTTGTTCTTTTATCTTCACACCTCATAGACGCTCTCACAGTCACTTCCTGACTCCATGCTCCTCCCTCAGACAGAGAGAAAGAGAGAGCAAAAAGCAACTAGGCAAGATCAACACTGCCCCGTCTGAGTCTGGCTTGAAGCGCTTGTTTAGTCCCAATAACAACAAGACCGAAGTCGAAGGTGACGCCGACGCCGACGCCGACGCTGACCTCGACTTCCAGGATGGAACCGCCTTGAAGGGCACCCTCTTGGCCGGTCTCTTGCTCCTCGGTGTTGTTGGCGGTTTTGCCTCCGTTGGCTATATCTACAAGGACCAAGTCAATTCCTTCTTGAACCACCTCTCCGTCTTCATTGAAGGTTATGGTCCTGCTGGATATGCATTATTCGTTGCCGTTTATGCTGGATTGGAGATCCTTGCAATTCCTGCCATTCCTTTAACCATGTCAGCTGGACTTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACAGTGGCAGCCAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGAATTGTAAAACTAGTGGAAGGAAATAAGAAGTTTGTTGCTATTGACAAAGCAATTGGAGAAAATGGGTTCAGGGTTGTGACCCTGCTTCGTTTGAGCCCTCTGCTGCCATTTTCTTTGGGGAATTATTTATATGGATTAACATCTGTTAAGTTTATTCCATATGTATTGGGAAGTTGGTTGGGGATGCTTCCAGGAACATGGGCTTATGTCAGTGCTGGTGCTTTTGGAAGAGCAATAATTCAAGATGAATCTGAACTTAGTAATATATTTGGAGGAAACAGTCAGTTGCTAACACTGGGGCTGGGACTGTTGGCCACTGCATTAGCTGCTGCATATGTCACACGACTTGCAAAGGATGCTATAAAGGACATTGAATAG
Predicted protein sequences of Glyma08g26000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g26000.3 sequence type=predicted peptide gene model=Glyma08g26000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MCTLSLPCLSYSLHTHTYQSGRFSPPCSFIFTPHRRSHSHFLTPCSSLRQRERESKKQLGKINTAPSESGLKRLFSPNNNKTEVEGDADADADADLDFQDGTALKGTLLAGLLLLGVVGGFASVGYIYKDQVNSFLNHLSVFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVVGTIIVSISGTVAASVAFLIARYFARERIVKLVEGNKKFVAIDKAIGENGFRVVTLLRLSPLLPFSLGNYLYGLTSVKFIPYVLGSWLGMLPGTWAYVSAGAFGRAIIQDESELSNIFGGNSQLLTLGLGLLATALAAAYVTRLAKDAIKDIE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
