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Report for Sequence Feature Glyma08g25971

Feature Type:gene_model
Chromosome:Gm08
Start:20346801
stop:20374490
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g25971
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G35530AT Annotation by Michelle Graham. TAIR10: DEAD/DEAH box RNA helicase family protein | chr1:13089994-13097078 FORWARD LENGTH=1390 SoyBaseE_val: 0ISS
GO:0000724GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0045128GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of reciprocal meiotic recombination SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG0354 KOG DEAD-box like helicase JGI ISS
PTHR14025Panther FAMILY NOT NAMED JGI ISS
PTHR14025:SF5Panther gb def: F15O4.40 JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
PF04851PFAM Type III restriction enzyme, res subunit JGI ISS
UniRef100_I3XHK1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Fanconia anemia complementation group M-like protein n=1 Tax=Arabidopsis thaliana RepID=I3XHK1_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI0002338F3DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338F3D related cluster n=1 Tax=unknown RepID=UPI0002338F3D SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g25971
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g25971 not represented in the dataset
Glyma08g25971 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g25971 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g238200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g25971
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g25971
>Glyma08g25971.1   sequence type=CDS   gene model=Glyma08g25971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCCTTATGAAATCGTTCTCTAGGCTCTACCAGGTGAATCCGAATTATCGAATGGCATCCAATAATCCTTACGAGATAATGGACGATGAGGGATTTGACTGGGAAGCAGCTGCTAGAGAAATCGACGTGGTTTGCCAGACGACCAGTGACGTAAAGGGAAAGGGAAGGGTTTTTGAGAAGAGAAAGCAGCAATCCACTCTCGATAAGTTCATATCTATTGCCAATGCCAATGCCGAAAAGGAAACCCCACCACCGCAGTTCCAAGAAGATGACCAAAGCCCTGCTTTCATCCACCACATTGACACCGAGGCTGCCAAAACTTGGATATATCCAGTTAATGTTCCTCTCCGTGACTATCAATTTGATATTACCCAGTCCGCACTTTTCTCAAACACATTGGTGGCCTTGCCAACGGGACTTGGCAAAACCCTCATTGCCGCTGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGCAAAATAGTCTTTGCTGCTCCTTCTCGGCCACTTGTCATGCAGCAGATAGAAGCATGCCACAATATTGTGGGAATACCTCAAGAATGGACAGTTGATATGACTGGTCAGCTAAGTCCTCCCAAAAGAGCTCAATTTTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTGTTGGAAAAGGATATTCATTCTGGTACATGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACGCTTATTGTGAAGCTGTTCGCGAGTTAATGTCTGTACCAGTACAGCTGAGAATATTAGCGTTAACTGCAACGCCAGGATCAAAGCAACAGACAGTCCAAGCTGTCATTGATAATTTGCATATCTCCAGACTTGAATATCGCAGTGAAACTGACCATGATGTTATCTCATATGTTCACAGTAGGAAGATAGAATTGATACAGGTTGCAATGGGCCCAGAAGCGGTAGAAATAAACAATAAGTTTATGGAAGTAATACGCCCTATAGTAGCCAGGCTTACAAATATTGGGGTCATTCAGAACAGAGATTACCGCACTTTGAGCCCTTGTCAATTACTTGAAATAAGGGAAAAGTTTCGCCAACGGCCTAGGCAAGATCTTTCTCATGTCAACTATGAAGATGTTGAAGGGTATTTTGGCGTTCTCATTACTCTTTATTACATCCATAAGTTGCTCTCAAGTCACGGAATAAGGCCAGCACATGAGATGCTTGAGAGAAAATTGAAGCAAGGATATTTTGCAAAATTTATGAGTAAAAATGAAGTTATTCTGAAAGCAAGGCAGCTAATGCAGCAAAGTTTGTCTCACGGAGCATCTAGTCCAAAATTGTCCAAAATGCTAGATGTATTACTGGAGCATTTCAAAACTAATGATCCGCAAAACTCCAGGGTAATTATCTTCTCCAATTACAGAGAAAGTGTCAGGGATATAATGAATGCACTTGGAGATATTGGGGAATTAGTCAAAGCTACTGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCTGGCGCCTATAATGTTATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTCAGAATGATCCAGCGAATGGGGAGAACAGGAAGAAAGCATGATGGACGAGTCGTAGTTTTTGCTTGTGAAGGGACAGAGTTGAAGGGCTACTTGCAAAAACAGGCAAAGAGCAAGACTATAAGTAAACACATGCGAAATGGGGGCATAAATAGCTTTACCTTTCATCCTAGTCCAAGGATGATTCCTCATGTCCTTAAACCAGAAGTTAAATGCGTTGAGCTGTCCATTGAGAAATTTATTCCTCGTCCAAAGAATGTGAAAGATGATGAGCTCCACATTTCTCCATCAAAGGACAAACTAACTGTTGCGGAAATTGATTTACTTGAAACATATTTTCACCCTACTGTGGAAAACAATAGTAGAATGTCTCTTATTGCCTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTGAAGCATTCCTCTGGAACATTGATGCTTATAGACATGATGCAGCGCTTGCAAGGACTAGTATCATTTCCAGAAGATGACAAAACTTCTTCACTTCAGGAAGATCTGTGTTTGGGACATGGTAAGCCAGTCACCACTACCGAACTTGATGAAGCTAAAAAGGACAATGAATCGTGCTCTAGGCATAAAATGAGAAGGAATTTAGTCTCTGTTAATTGTCTGGAGATGGATTCGTGTCATTTGGGGATTCAAAGCAAAGACTTAGTTGACCTAACTCGACAAGATGGTACTTTCTGTGACTTGGGTAAGAATCAAGAGGAAGCATGTGAGGGTGATGAGACAATTCCTGAAACTCCAATTGCTAAGAGAAGTTTGTCAAATGAAGGAGATAATGATGGTCAAATGGTAAATCTTGTGGAGATTGAGACTTCTTCATTGGCTGCAAATGCATGCATTAATGGCATGAGAGATGAAGAACTTAGTCCACGTTTAACTAATTTGATTAGAAGTGGTGTTGTTCCAGAGTCTCCGGTTGACGAAAGAGGGAAATCAAGATACAATTCTATCATACGTGATTTTGTGTTACCTGTTCATCTCCACAAAGAACAGGATGTTAGTTCTTTAAGCTCTAGTGAAACTAAAGAGGTCATTATTGATAAGGGCACCAACAAGAATGTCTGTACTTCCCCCATTAATGAAACTCAAAGCCCTTTACTTGACCTGAAAAATTGTGCAATTAGAAGAGGACGAGTCTTCCTTTCTCAAATTGAGGAAGGCCATGCACATAACACTGATCCAAGCTTCAGCGAAGAAGCATATCCAGCAGATTGTGGTGAAATGTCCGAAAGCATTAAACCTGCACGCAAATTTAAAAGGTTGCGGAAAGCTGAAGATACTGAAAGAAATATGAATCAGAAAAACAATAAACTTTTTGCTTCAACAGCAAACTTTCTCAAACCATCTTCTGCCTCCAATCCTGCACAATATAAGCATGGCCAAGGTAAAAGGAAATCAACACACAATGTGAGAGACTTCATTGAGGAGGAAGCCGAAGTATCTTCAGATGGCTATGTATCTAATGATGAAGATGATGAGGAAGGCAGTTCATTTGACAGTTTCATAGATGACAGGACCAACCCTACAGCAGCCAGTCAGCCTGAAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCTTTGCTCAGTCAAACACCAAGTAATGGAGGGCTTGATCTTTGTGCCACCTTTACTCCTGACCGTGTGACTATGGCAGCCAGTATTAGTGAAAGTGAGGATTCTACAGGGAAGACAGTGGATCACTTCCACGCAGAGCCAACCAAACAGTCAGCAAATCGGACTTTGGAATCTGTTAGTATCAACCAGATAACCTCAGAAGCAGTGGCTTCAACTTGTTATCCTATGGGAACTGGGACAGAGACAAGAAGTCACAAACGAAGATTGGCATTTTACCATTCTGGACACTTCCCAAATATGAACCTTCAACGAGAATTTGAACTTCAATCAAAGAAAGACGTAGTGCACACTGATGCAACTACAGATGTTCTATGTGATGATCAATTTTATAATGATCTTGATCTTGACGAGTTGGAGGCACAAGCAACATTGCTTCTAAAACAGAAATTAGATTTGTCTAATCAGAAACAAGATACGGTCCCTCAATCTCACACATCCAATCTTGATATTTTTCAGTCTCCATCATTTGACCTTGGGATATGA
Predicted protein sequences of Glyma08g25971
>Glyma08g25971.1   sequence type=predicted peptide   gene model=Glyma08g25971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLMKSFSRLYQVNPNYRMASNNPYEIMDDEGFDWEAAAREIDVVCQTTSDVKGKGRVFEKRKQQSTLDKFISIANANAEKETPPPQFQEDDQSPAFIHHIDTEAAKTWIYPVNVPLRDYQFDITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQLSPPKRAQFWKTKRVFFVTPQVLEKDIHSGTCLVKYLVCLVIDEAHRAMGNYAYCEAVRELMSVPVQLRILALTATPGSKQQTVQAVIDNLHISRLEYRSETDHDVISYVHSRKIELIQVAMGPEAVEINNKFMEVIRPIVARLTNIGVIQNRDYRTLSPCQLLEIREKFRQRPRQDLSHVNYEDVEGYFGVLITLYYIHKLLSSHGIRPAHEMLERKLKQGYFAKFMSKNEVILKARQLMQQSLSHGASSPKLSKMLDVLLEHFKTNDPQNSRVIIFSNYRESVRDIMNALGDIGELVKATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVFACEGTELKGYLQKQAKSKTISKHMRNGGINSFTFHPSPRMIPHVLKPEVKCVELSIEKFIPRPKNVKDDELHISPSKDKLTVAEIDLLETYFHPTVENNSRMSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQGLVSFPEDDKTSSLQEDLCLGHGKPVTTTELDEAKKDNESCSRHKMRRNLVSVNCLEMDSCHLGIQSKDLVDLTRQDGTFCDLGKNQEEACEGDETIPETPIAKRSLSNEGDNDGQMVNLVEIETSSLAANACINGMRDEELSPRLTNLIRSGVVPESPVDERGKSRYNSIIRDFVLPVHLHKEQDVSSLSSSETKEVIIDKGTNKNVCTSPINETQSPLLDLKNCAIRRGRVFLSQIEEGHAHNTDPSFSEEAYPADCGEMSESIKPARKFKRLRKAEDTERNMNQKNNKLFASTANFLKPSSASNPAQYKHGQGKRKSTHNVRDFIEEEAEVSSDGYVSNDEDDEEGSSFDSFIDDRTNPTAASQPEASRMDMMAIYRRSLLSQTPSNGGLDLCATFTPDRVTMAASISESEDSTGKTVDHFHAEPTKQSANRTLESVSINQITSEAVASTCYPMGTGTETRSHKRRLAFYHSGHFPNMNLQREFELQSKKDVVHTDATTDVLCDDQFYNDLDLDELEAQATLLLKQKLDLSNQKQDTVPQSHTSNLDIFQSPSFDLGI*






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