Glyma08g25940 - SoyBase

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Report for Sequence Feature Glyma08g25940

Feature Type:	gene_model
Chromosome:	Gm08
Start:	20325690
stop:	20330690
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g25940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G33970	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:12349614-12350960 REVERSE LENGTH=342	SoyBase	E_val: 4.00E-135	ISS
GO:0006897	GO-bp	Annotation by Michelle Graham. GO Biological Process: endocytosis	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
PTHR10903	Panther	AIG1	JGI		ISS
PTHR10903:SF2	Panther	AIG1	JGI		ISS
PF04548	PFAM	AIG1 family	JGI		ISS
UniRef100_B9R8X8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aig1, putative n=1 Tax=Ricinus communis RepID=B9R8X8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KW77	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KW77_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g25940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g25940 not represented in the dataset	Glyma08g25940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g25940

Paralog	Evidence	Comments
Glyma12g00270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g25940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g238000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g25940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g25940

Limit To All Plant Sequences

>Glyma08g25940.2   sequence type=transcript   gene model=Glyma08g25940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCTGTTTGGGTTAGTGTTTACACTGTTTCTTGCTTGGAAGAGGCTCTCCCTACACTACAGTGACCTGGATTTGTGATGGGTGGAAGTTCTATTGATGATGATTGGGAGCTCACTTCCTCATCTAATGAGGTTCGGACAGTGGTCTTAGTTGGACGTACCGGCAATGGCAAGAGTGCAACAGGTAATACCATTCTTGGAAGGAAGGCCTTCAAGTCAAGGGCAAGCTCCTCTGCTGTATCCACCTCATGTGAATTGAAAACAACAGAATTAAACAACGGACAAATTGTTAATGTTATTGACACCCCAGGATTATTTGATTTGTCTGCCGGATCTGAGTTTGTTGGTAAGGAAATTGTCAAATGCATTGATTTGGCCAAGGATGGGATCCATGCTGTCATTGTAGTGTTCTCGGTTAGAACACGCTTTACTGAGGAAGAAGAAACTGCTCTACGGAGCTTGCAGACATTATTTGGAAGCAAAATTGTTGATTACATGATTGTGGTCTTCACTGGAGGAGATGAATTGGAAGAAAATGATGAGACACTTGAGGATTATTTAGGCCGTGAATGTCCAGAGCCTTTAAAGGAAATTCTTGTTCTGTGTGAGAATCGTTGTGTACTTTTTGATAACAAGACTAAGGATGAAGGGAAGCGCTTTGGACAAGTTCAACAACTTCTCTCTTTTGTAAACATGGTTTTATCTCGTAATGGTGGACGACCTTATACAGATGAGTTATTTACTCAACTGAAGAAGGGAGCAATGGAGCTGCATAACCAACAAAGAGAGGTTGATTCTTTAAAAGGATATTCAAAAGGAGAGATATTGGAGTTTAAAAAGCAAATGCAGCAAACATATGATGAACAATTAAAACGAATTACTGAGATGTTGAGGGAGGCAACTATGAGGCTTGAGGAACAATTGGCAGAAGAGCAAGCTGCAAGACTTAAGGCGGAGGAGAATGCAATGTTAGCTCAAATGAGATCAGATGATGAAATACGAAAACTCAGAGAACATCTTGAGAAGGCACATGAAGAACTTCGCAAGCGAGGTGGAGGTGGTTGTGCCATTCTTTGATAGTAGCTACTTCAAACTTCAGAAGAGTTTATTTATGTTATTTTTCTCTTGGAGATCGTGACATCAAATAGCTGTTGCATTTGCAGGGTTAATACCTGAATAAGTGCCATGACTATTATGCAATTATTTTTATTCTTATGTTCACATCATGCATTATGAGATTGGAGATATTTTCTAATCTGGTTTTCATGCTTCTCACTCCAGTAATTTCAATACGAGTTATAGTGTTTTCTGTTAAGTTGTAGTGTGACTTCAATTAGTATATTTCTACTATTTGATAAAATCAACCGTATTTTGTTTTCTGTTATTGATTGGTTAACTTCTAAACTACTAT

>Glyma08g25940.3   sequence type=transcript   gene model=Glyma08g25940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTTAGTGTTTACACTGTTTCTTGCTTGGAAGAGGCTCTCCCTACACTACAGTTTTGTTTCAGTGACCTGGATTTGTGATGGGTGGAAGTTCTATTGATGATGATTGGGAGCTCACTTCCTCATCTAATGAGGTTCGGACAGTGGTCTTAGTTGGACGTACCGGCAATGGCAAGAGTGCAACAGGTAATACCATTCTTGGAAGGAAGGCCTTCAAGTCAAGGGCAAGCTCCTCTGCTGTATCCACCTCATGTGAATTGAAAACAACAGAATTAAACAACGGACAAATTGTTAATGTTATTGACACCCCAGGATTATTTGATTTGTCTGCCGGATCTGAGTTTGTTGGTAAGGAAATTGTCAAATGCATTGATTTGGCCAAGGATGGGATCCATGCTGTCATTGTAGTGTTCTCGGTTAGAACACGCTTTACTGAGGAAGAAGAAACTGCTCTACGGAGCTTGCAGACATTATTTGGAAGCAAAATTGTTGATTACATGATTGTGGTCTTCACTGGAGGAGATGAATTGGAAGAAAATGATGAGACACTTGAGGATTATTTAGGCCGTGAATGTCCAGAGCCTTTAAAGGAAATTCTTGTTCTGTGTGAGAATCGTTGTGTACTTTTTGATAACAAGACTAAGGATGAAGGGAAGCGCTTTGGACAAGTTCAACAACTTCTCTCTTTTGTAAACATGGTTTTATCTCGTAATGGTGGACGACCTTATACAGATGAGTTATTTACTCAACTGAAGAAGGGAGCAATGGAGCTGCATAACCAACAAAGAGAGGTTGATTCTTTAAAAGGATATTCAAAAGGAGAGATATTGGAGTTTAAAAAGCAAATGCAGCAAACATATGATGAACAATTAAAACGAATTACTGAGATGGTTGAATCAAAGTTGAGGGAGGCAACTATGAGGCTTGAGGAACAATTGGCAGAAGAGCAAGCTGCAAGACTTAAGGCGGAGGAGAATGCAATGTTAGCTCAAATGAGATCAGATGATGAAATACGAAAACTCAGAGAACATCTTGAGAAGGCACATGAAGAACTTCGCAAGCGAGGTGGAGGTGGTTGTGCCATTCTTTGATAGTAGCTACTTCAAACTTCAGAAGAGTTTATTTATGTTATTTTTCTCTTGGAGATCGTGACATCAAATAGCTGTTGCATTTGCAGGGTTAATACCTGAATAAGTGCCATGACTATTATGCAATTATTTTTATTCTTATGTTCACATCATGCATTATGAGATTGGAGATATTTTCTAATCTGGTTTTCATGCTTCTCACTCCAGTAATTTCAATACGAGTTATAGTGTTTTCTGTTAAGTTGTAGTGTGACTTCAATTAGTATATTTCTACTATTTGATAAAATCAACCGTATTTTGTTTTCTGTTATTGATTGGTTAACTTCTAAACTACTAT

Coding sequences of Glyma08g25940

Limit To All Plant Sequences

>Glyma08g25940.1   sequence type=CDS   gene model=Glyma08g25940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGAAGTTCTATTGATGATGATTGGGAGCTCACTTCCTCATCTAATGAGGTTCGGACAGTGGTCTTAGTTGGACGTACCGGCAATGGCAAGAGTGCAACAGGTAATACCATTCTTGGAAGGAAGGCCTTCAAGTCAAGGGCAAGCTCCTCTGCTGTATCCACCTCATGTGAATTGAAAACAACAGAATTAAACAACGGACAAATTGTTAATGTTATTGACACCCCAGGATTATTTGATTTGTCTGCCGGATCTGAGTTTGTTGGTAAGGAAATTGTCAAATGCATTGATTTGGCCAAGGATGGGATCCATGCTGTCATTGTAGTGTTCTCGGTTAGAACACGCTTTACTGAGGAAGAAGAAACTGCTCTACGGAGCTTGCAGACATTATTTGGAAGCAAAATTGTTGATTACATGATTGTGGTCTTCACTGGAGGAGATGAATTGGAAGAAAATGATGAGACACTTGAGGATTATTTAGGCCGTGAATGTCCAGAGCCTTTAAAGGAAATTCTTGTTCTGTGTGAGAATCGTTGTGTACTTTTTGATAACAAGACTAAGGATGAAGGGAAGCGCTTTGGACAAGTTCAACAACTTCTCTCTTTTGTAAACATGGTTTTATCTCGTAATGGTGGACGACCTTATACAGATGAGTTATTTACTCAACTGAAGAAGGGAGCAATGGAGCTGCATAACCAACAAAGAGAGGTTGATTCTTTAAAAGGATATTCAAAAGGAGAGATATTGGAGTTTAAAAAGCAAATGCAGCAAACATATGATGAACAATTAAAACGAATTACTGAGATGGTTGAATCAAAGTTGAGGGAGGCAACTATGAGGCTTGAGGAACAATTGGCAGAAGAGCAAGCTGCAAGACTTAAGGCGGAGGAGAATGCAATGTTAGCTCAAATGAGATCAGATGATGAAATACGAAAACTCAGAGAACATCTTGAGAAGGCACATGAAGAACTTCGCAAGCGAGGTGGAGGTGGTTGTGCCATTCTTTGA

>Glyma08g25940.2   sequence type=CDS   gene model=Glyma08g25940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGAAGTTCTATTGATGATGATTGGGAGCTCACTTCCTCATCTAATGAGGTTCGGACAGTGGTCTTAGTTGGACGTACCGGCAATGGCAAGAGTGCAACAGGTAATACCATTCTTGGAAGGAAGGCCTTCAAGTCAAGGGCAAGCTCCTCTGCTGTATCCACCTCATGTGAATTGAAAACAACAGAATTAAACAACGGACAAATTGTTAATGTTATTGACACCCCAGGATTATTTGATTTGTCTGCCGGATCTGAGTTTGTTGGTAAGGAAATTGTCAAATGCATTGATTTGGCCAAGGATGGGATCCATGCTGTCATTGTAGTGTTCTCGGTTAGAACACGCTTTACTGAGGAAGAAGAAACTGCTCTACGGAGCTTGCAGACATTATTTGGAAGCAAAATTGTTGATTACATGATTGTGGTCTTCACTGGAGGAGATGAATTGGAAGAAAATGATGAGACACTTGAGGATTATTTAGGCCGTGAATGTCCAGAGCCTTTAAAGGAAATTCTTGTTCTGTGTGAGAATCGTTGTGTACTTTTTGATAACAAGACTAAGGATGAAGGGAAGCGCTTTGGACAAGTTCAACAACTTCTCTCTTTTGTAAACATGGTTTTATCTCGTAATGGTGGACGACCTTATACAGATGAGTTATTTACTCAACTGAAGAAGGGAGCAATGGAGCTGCATAACCAACAAAGAGAGGTTGATTCTTTAAAAGGATATTCAAAAGGAGAGATATTGGAGTTTAAAAAGCAAATGCAGCAAACATATGATGAACAATTAAAACGAATTACTGAGATGTTGAGGGAGGCAACTATGAGGCTTGAGGAACAATTGGCAGAAGAGCAAGCTGCAAGACTTAAGGCGGAGGAGAATGCAATGTTAGCTCAAATGAGATCAGATGATGAAATACGAAAACTCAGAGAACATCTTGAGAAGGCACATGAAGAACTTCGCAAGCGAGGTGGAGGTGGTTGTGCCATTCTTTGA

>Glyma08g25940.3   sequence type=CDS   gene model=Glyma08g25940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGAAGTTCTATTGATGATGATTGGGAGCTCACTTCCTCATCTAATGAGGTTCGGACAGTGGTCTTAGTTGGACGTACCGGCAATGGCAAGAGTGCAACAGGTAATACCATTCTTGGAAGGAAGGCCTTCAAGTCAAGGGCAAGCTCCTCTGCTGTATCCACCTCATGTGAATTGAAAACAACAGAATTAAACAACGGACAAATTGTTAATGTTATTGACACCCCAGGATTATTTGATTTGTCTGCCGGATCTGAGTTTGTTGGTAAGGAAATTGTCAAATGCATTGATTTGGCCAAGGATGGGATCCATGCTGTCATTGTAGTGTTCTCGGTTAGAACACGCTTTACTGAGGAAGAAGAAACTGCTCTACGGAGCTTGCAGACATTATTTGGAAGCAAAATTGTTGATTACATGATTGTGGTCTTCACTGGAGGAGATGAATTGGAAGAAAATGATGAGACACTTGAGGATTATTTAGGCCGTGAATGTCCAGAGCCTTTAAAGGAAATTCTTGTTCTGTGTGAGAATCGTTGTGTACTTTTTGATAACAAGACTAAGGATGAAGGGAAGCGCTTTGGACAAGTTCAACAACTTCTCTCTTTTGTAAACATGGTTTTATCTCGTAATGGTGGACGACCTTATACAGATGAGTTATTTACTCAACTGAAGAAGGGAGCAATGGAGCTGCATAACCAACAAAGAGAGGTTGATTCTTTAAAAGGATATTCAAAAGGAGAGATATTGGAGTTTAAAAAGCAAATGCAGCAAACATATGATGAACAATTAAAACGAATTACTGAGATGGTTGAATCAAAGTTGAGGGAGGCAACTATGAGGCTTGAGGAACAATTGGCAGAAGAGCAAGCTGCAAGACTTAAGGCGGAGGAGAATGCAATGTTAGCTCAAATGAGATCAGATGATGAAATACGAAAACTCAGAGAACATCTTGAGAAGGCACATGAAGAACTTCGCAAGCGAGGTGGAGGTGGTTGTGCCATTCTTTGA

Predicted protein sequences of Glyma08g25940

Limit To All Plant Sequences

>Glyma08g25940.1   sequence type=predicted peptide   gene model=Glyma08g25940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSSIDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTELNNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETALRSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDNKTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGYSKGEILEFKKQMQQTYDEQLKRITEMVESKLREATMRLEEQLAEEQAARLKAEENAMLAQMRSDDEIRKLREHLEKAHEELRKRGGGGCAIL*

>Glyma08g25940.2   sequence type=predicted peptide   gene model=Glyma08g25940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSSIDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTELNNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETALRSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDNKTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGYSKGEILEFKKQMQQTYDEQLKRITEMLREATMRLEEQLAEEQAARLKAEENAMLAQMRSDDEIRKLREHLEKAHEELRKRGGGGCAIL*

>Glyma08g25940.3   sequence type=predicted peptide   gene model=Glyma08g25940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSSIDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTELNNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETALRSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDNKTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGYSKGEILEFKKQMQQTYDEQLKRITEMVESKLREATMRLEEQLAEEQAARLKAEENAMLAQMRSDDEIRKLREHLEKAHEELRKRGGGGCAIL*

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