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Report for Sequence Feature Glyma08g25800

Feature Type:gene_model
Chromosome:Gm08
Start:20197772
stop:20199380
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g25800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G66350AT Annotation by Michelle Graham. TAIR10: RGA-like 1 | chr1:24748327-24749862 FORWARD LENGTH=511 SoyBaseE_val: 1.00E-50ISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009739GO-bp Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus SoyBaseN/AISS
GO:0009740GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009938GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010325GO-bp Annotation by Michelle Graham. GO Biological Process: raffinose family oligosaccharide biosynthetic process SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0048444GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ morphogenesis SoyBaseN/AISS
GO:2000377GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of reactive oxygen species metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF03514PFAM GRAS family transcription factor JGI ISS
UniRef100_B9RHZ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: DELLA protein GAI1, putative n=1 Tax=Ricinus communis RepID=B9RHZ2_RICCO SoyBaseE_val: 4.00E-146ISS
UniRef100_I1KW68UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KW68_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g25800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g25800 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g237300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g25800
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g25800
>Glyma08g25800.2   sequence type=CDS   gene model=Glyma08g25800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGACATAAACAGGTGGCTATCTTTCTATGTGAATGGAAGTGTTAACCATGATTTCGCCATACGAAAGTATTGCCCTGCAAGAATGGAGCAAGAACAACGAGGAGAATGGCAAGATCAAGAGGCAGCAGTAGTTTTTTATGACACTGAATTATGTTCTTCTTCTGATGCTACAGGTGGCAGCACTCCTTGTTTGGTTTCATCAGAATATGAGTATGAGAATGAAAATCAAGGGTCCCAAGAGAAGCATCATCAAAGTTTTGACCACTTTGTGGTGAATGATGAGGATGATGCATACTCCATGGTGAATGGTGGAGTCTTTGAATATGTTCCAACCACCTTGGAGGATTCAGAATTGGAGATCCATGAAGCTCTCACAACAACCATGTGGGAGGAAGAGGAGACGCGCTGTTTTGCCAAAGGATTGAAGTGTAGGTTATCACTTCTTCCTCATAATGTCATTGCAAATGGAACACTCACAAGCATTTCCATGGATGTGCCTTTGATCTCTAGGGAGAATAAGATGGAAGCTTTTCAGCTTCTTTACCAAACCACGCCTTACATTTCCTTTGGTTTCATGGGTGCAAATGAAGTCATATATCAAGCATCACAAGGAAAGAGCTCAATGCACATTGTCGACTTAGGAATGGAGAATACCCTTCAGTGGTCTTCCCTAATTAGGGCCCTTGCTTCAAGGCCTGAGGGCCATCCAACGCTCCGGATCACCGGATTAACCGGCAATGAAGACAACTCAAATCTTCAAACAAGCATGAATGTGCTTTTGAACAAATATGTCAAGGAAAGTAGAGGCTATCTGAAGGAAATTCTTCTATCAATAAAGAAGTTAGGTCCAACTGCACTTACAGTGGTGGAGCAAGACACAAACCACAATGGCCATTTCTTCCTTGGGAGATTTTTGGAATCACTTCACTATTACTCAGCCATATTTGATTCTCTCGAGCCAAGTATGCCAAGAAATAGACAACACAGGATGAAAATAGAGAGATTACACTTTGCAGAAGAAATTCGGAATGTTGTAGCTTATGAGGGTCAAGATAGAATAGAAAGACATGAAAGGGTAGACCAATGGAGAAGGCAATTAGGCCGAGCAGGGTTTCAGGTAATGCCACTGAAGTGCAATAGTCAAGTTAGAATGATGCTTTCTGTTTATGACTGTGATGGATATACATTGTCCAGTGAGAAGGGAAATCTTTTACTAGGGTGGAAAGGAAGGCCAGTAATCATGGCTTCTGCATGGTAA
Predicted protein sequences of Glyma08g25800
>Glyma08g25800.2   sequence type=predicted peptide   gene model=Glyma08g25800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDINRWLSFYVNGSVNHDFAIRKYCPARMEQEQRGEWQDQEAAVVFYDTELCSSSDATGGSTPCLVSSEYEYENENQGSQEKHHQSFDHFVVNDEDDAYSMVNGGVFEYVPTTLEDSELEIHEALTTTMWEEEETRCFAKGLKCRLSLLPHNVIANGTLTSISMDVPLISRENKMEAFQLLYQTTPYISFGFMGANEVIYQASQGKSSMHIVDLGMENTLQWSSLIRALASRPEGHPTLRITGLTGNEDNSNLQTSMNVLLNKYVKESRGYLKEILLSIKKLGPTALTVVEQDTNHNGHFFLGRFLESLHYYSAIFDSLEPSMPRNRQHRMKIERLHFAEEIRNVVAYEGQDRIERHERVDQWRRQLGRAGFQVMPLKCNSQVRMMLSVYDCDGYTLSSEKGNLLLGWKGRPVIMASAW*






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