SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G56050 | AT | Annotation by Michelle Graham. TAIR10: GTP-binding protein-related | chr1:20963793-20966181 FORWARD LENGTH=421 | SoyBase | E_val: 0 | ISS |
| GO:0006783 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1491 | KOG | Predicted GTP-binding protein (ODN superfamily) | JGI | ISS | |
| PTHR23305 | Panther | GTP-BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR23305:SF5 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01926 | PFAM | GTPase of unknown function | JGI | ISS | |
| PF06071 | PFAM | Protein of unknown function (DUF933) | JGI | ISS | |
| UniRef100_B9RI48 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RI48_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I3SBQ5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Lotus japonicus RepID=I3SBQ5_LOTJA | SoyBase | E_val: 0 | ISS |
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Glyma08g25673 not represented in the dataset |
Glyma08g25673 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g236400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g25673.1 sequence type=CDS gene model=Glyma08g25673 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAGAGCAGCTTGCAATCACCTTCACTTGGTTCCCAGTTTAGTTCATCCTCTAAAGTCAACCCTCTTCACAAATCACACTCTTTCCACCACACGCACTCGCTTCTATGGCATTCACCGAAGGTTCTCTTCTTCTTCATCCAAAATAAGCATGAGCCTCAAGGCTGGTATTGTTGGCCTTCCCAACGTTGGCAAGTCCACTCTCTTCAATGCCGTTGTGGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTTCACGTGCTTTCTGATCTCAGCAAATCTCAACGAGCAGTTCCAGCATCAATAGAGTTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGAGAGGGTTTGGGCAATAAGTTTTTGTCTCATATTCGTGAGGTGGACTCTATACTTCAGGTTGTACGATGTTTTGAAGACAACGACATTGTTCATGTGAATGGGAAAGTTGATCCCAAGTCTGATATTGATGTTATCAATTTGGAGCTTGTTTTCTCAGATTTGGACCAGATTGAAAAAAGAATTGATAAGCTAAAGAAAGGCAAGGCAAAGGATTCACAAAAACTCAAGGAAGAGGCAGAAAAGTCTGCACTGGAAAAGATTCGTGAGGCGCTTATGGATGGAAAACCTGCGCGATCTGTTACCTTAACTGATTTTGAAAGGGATGCTGTAAAGCATCTCTGCTTGCTCACCATGAAACCTGTTATATATGTGGCAAATGTTGCAGAATCTGATCTAGCTGATCCTGCAAACAATAATTATGTCAAGGACGTAACAAATGTTGTGTCTGAGTTGCAGTCCAGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAACTACCAGTTGAAGAACGACAAGAATATTTGCAATCTCTTGGTGTTAGTGAAAGTGGTCTTGGCAACCTAATAAGGGCAACATATGACCTTCTGGGTCTCAGAACTTACTTTACTTCTGGTGAGAAGGAGACAAAGGCATGGACAATACTTGCAGGAATGACTGCACCTCAAGCAGCTGGAGTTATTCACTCTGACTTTGAGAAGGGTTTCATTCGAGCAGAGACAGTGTCTTATGAGGATTTTGTTGCTGCTGGTTCACTTTCTGCAGCACGAGAGAAAGGACTGTTGAGATCTGAAGGTAAAGACTACGTTGTACAAGAAGCAGATGTCATGTTGTTTCGATTCAATGTTTAG
>Glyma08g25673.1 sequence type=predicted peptide gene model=Glyma08g25673 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARAACNHLHLVPSLVHPLKSTLFTNHTLSTTRTRFYGIHRRFSSSSSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIEKRIDKLKKGKAKDSQKLKEEAEKSALEKIREALMDGKPARSVTLTDFERDAVKHLCLLTMKPVIYVANVAESDLADPANNNYVKDVTNVVSELQSRIVTISAQVEAELTELPVEERQEYLQSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYEDFVAAGSLSAAREKGLLRSEGKDYVVQEADVMLFRFNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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