Glyma08g25630 - SoyBase

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Report for Sequence Feature Glyma08g25630

Feature Type:	gene_model
Chromosome:	Gm08
Start:	20004388
stop:	20009737
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g25630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16520	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). \| chr1:5648904-5650998 FORWARD LENGTH=325	SoyBase	E_val: 2.00E-142	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KW60	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KW60_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q75GP1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q75GP1_ORYSJ	SoyBase	E_val: 1.00E-129	ISS

Expression Patterns of Glyma08g25630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g25630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g236200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g25630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g25630

Limit To All Plant Sequences

>Glyma08g25630.2   sequence type=transcript   gene model=Glyma08g25630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAAAGTGGTAGAGTATTGACACAGCTCGTAACCATAGTGTCCTCACAGTGACGAAGAAGATTAATCACAATTTTTAACTTAGATTAATTTATTAAAAACTTTATTTATCAATTTATTTTACATTAAAATGATTTCTGATTCGTTATGAGGAGGGTTTAGTTTCCCTGGTTGATTCCTCCACAATCAAGAAAACCCAGGCAACAAGCACAACCAAACAGGCAGGGATGTCGTCGCAGGGCACAGGTTCAGTAGTGGATTTCGACCTCCCTGACGAGATTCTATCGGTTATACCGACGGACCCATACCAGCAGCTTGATCTCGCTCGCAAGATAACCTCCATGGCCATCGCCTCTCGTGTCTCTTCTCTCGAGTCCGACGCCTCTCGCCTCCGCCAGAAGCTTCTCGAAAAGGACCGAATCATCCTCGACCTCGAAGACCGCCTCTCCTCCCTCACCCGCGCCTCCCACCAAACCGACTCCACCCTCAACACCGCCCTCAACGAAAACATTAAGCTTTCCAAGGAGAGGGATCAATTGGCCGCCACCGTCAAGAAGTTAAGTCGAGACTTTGCCAAGTTGGAGACATTTAAGAAACAACTGATGCAGTCGCTAACTGATGACAATGCATCGCATGCTGAAACCATAGATATTGGAACCTGTGATCAATCAGTTCCAAAGGCATATCCTGATAAGGATGATGATGGAAGTGGCTATATGGTACATCATTCATACAATGGCCCTGCAGATGTGGGTAAAACAAATGATGAAGCTTCCAGGTATTCAGGGCAAAGGTTTTCTTTGACCCCATATATCACACCACGTCTTACACCGACAGGAACTCCAAAGGTGATTTCAACAGCCGGGTCTCCTAGAGAATATTCTGCAGCTGGATCACCCAAGAAAACTTCTGGTGCCACCTCTCCTACAAAACTTCCATATGATGGGCGAACATCTCTCTCATCATGGTATTCATCTAGTCAGCAGTCATCAGCAGCAAACTCCCCACCATGGGGACGATCACTTCCAGTTCGAACTCCAAAGATTGATGGAAAGGAGTTTTTTCGTCAGGCCAGGAGTCGCCTTTCATATGAGCAGTTCAGTGCATTTCTTGCCAACATAAAGGAATTAAATGCTCAGAAGCAAACACGGGAGGAAACTTTAAGAAAAGCAGATGAGATATTTGGGTCAGATAACAAAGATCTTTACTTATCTTTTCAAGGATTGCTTAACCGTAATGCACGCTAGTACTGAAAGCAGCATTGCCGAGTATTGTATGAGTTGGTATGTAAATTGCCGGTTATCATTTCTGTTCTTGTTTTTCTGTCACCGTGTTTGTGCATCTTTATTTTTTGAAATGTGGAGGAAGTTGCACCCTATGTTATGAGAACTAGACCGGTCATCGATGTATTGAATTAACGAGTCACTAGCTCAACTAGTGTGAATCACTGCATGAACCGATTTATATTAAAAATATGAATGATATAAATTATAGGTTTAATTACTCTTTT

Coding sequences of Glyma08g25630

Limit To All Plant Sequences

>Glyma08g25630.1   sequence type=CDS   gene model=Glyma08g25630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGCAGGGCACAGGTTCAGTAGTGGATTTCGACCTCCCTGACGAGATTCTATCGGTTATACCGACGGACCCATACCAGCAGCTTGATCTCGCTCGCAAGATAACCTCCATGGCCATCGCCTCTCGTGTCTCTTCTCTCGAGTCCGACGCCTCTCGCCTCCGCCAGAAGCTTCTCGAAAAGGACCGAATCATCCTCGACCTCGAAGACCGCCTCTCCTCCCTCACCCGCGCCTCCCACCAAACCGACTCCACCCTCAACACCGCCCTCAACGAAAACATTAAGCTTTCCAAGGAGAGGGATCAATTGGCCGCCACCGTCAAGAAGTTAAGTCGAGACTTTGCCAAGTTGGAGACATTTAAGAAACAACTGATGCAGTCGCTAACTGATGACAATGCATCGCATGCTGAAACCATAGATATTGGAACCTGTGATCAATCAGTTCCAAAGGCATATCCTGATAAGGATGATGATGGAAGTGGCTATATGGTACATCATTCATACAATGGCCCTGCAGATGTGGGTAAAACAAATGATGAAGCTTCCAGGTATTCAGGGCAAAGGTTTTCTTTGACCCCATATATCACACCACGTCTTACACCGACAGGAACTCCAAAGGTGATTTCAACAGCCGGGTCTCCTAGAGAATATTCTGCAGCTGGATCACCCAAGAAAACTTCTGGTGCCACCTCTCCTACAAAACTTCCATATGATGGGCGAACATCTCTCTCATCATGGTATTCATCTAGTCAGCAGTCATCAGCAGCAAACTCCCCACCATGGGGACGATCACTTCCAGTTCGAACTCCAAAGATTGATGGAAAGGAGTTTTTTCGTCAGGCCAGGAGTCGCCTTTCATATGAGCAGTTCAGTGCATTTCTTGCCAACATAAAGGAATTAAATGCTCAGAAGCAAACACGGGAGGAAACTTTAAGAAAAGCAGATGAGATATTTGGGTCAGATAACAAAGATCTTTACTTATCTTTTCAAGGATTGCTTAACCGTAATGCACGCTAG

>Glyma08g25630.2   sequence type=CDS   gene model=Glyma08g25630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGCAGGGCACAGGTTCAGTAGTGGATTTCGACCTCCCTGACGAGATTCTATCGGTTATACCGACGGACCCATACCAGCAGCTTGATCTCGCTCGCAAGATAACCTCCATGGCCATCGCCTCTCGTGTCTCTTCTCTCGAGTCCGACGCCTCTCGCCTCCGCCAGAAGCTTCTCGAAAAGGACCGAATCATCCTCGACCTCGAAGACCGCCTCTCCTCCCTCACCCGCGCCTCCCACCAAACCGACTCCACCCTCAACACCGCCCTCAACGAAAACATTAAGCTTTCCAAGGAGAGGGATCAATTGGCCGCCACCGTCAAGAAGTTAAGTCGAGACTTTGCCAAGTTGGAGACATTTAAGAAACAACTGATGCAGTCGCTAACTGATGACAATGCATCGCATGCTGAAACCATAGATATTGGAACCTGTGATCAATCAGTTCCAAAGGCATATCCTGATAAGGATGATGATGGAAGTGGCTATATGGTACATCATTCATACAATGGCCCTGCAGATGTGGGTAAAACAAATGATGAAGCTTCCAGGTATTCAGGGCAAAGGTTTTCTTTGACCCCATATATCACACCACGTCTTACACCGACAGGAACTCCAAAGGTGATTTCAACAGCCGGGTCTCCTAGAGAATATTCTGCAGCTGGATCACCCAAGAAAACTTCTGGTGCCACCTCTCCTACAAAACTTCCATATGATGGGCGAACATCTCTCTCATCATGGTATTCATCTAGTCAGCAGTCATCAGCAGCAAACTCCCCACCATGGGGACGATCACTTCCAGTTCGAACTCCAAAGATTGATGGAAAGGAGTTTTTTCGTCAGGCCAGGAGTCGCCTTTCATATGAGCAGTTCAGTGCATTTCTTGCCAACATAAAGGAATTAAATGCTCAGAAGCAAACACGGGAGGAAACTTTAAGAAAAGCAGATGAGATATTTGGGTCAGATAACAAAGATCTTTACTTATCTTTTCAAGGATTGCTTAACCGTAATGCACGCTAG

Predicted protein sequences of Glyma08g25630

Limit To All Plant Sequences

>Glyma08g25630.1   sequence type=predicted peptide   gene model=Glyma08g25630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSQGTGSVVDFDLPDEILSVIPTDPYQQLDLARKITSMAIASRVSSLESDASRLRQKLLEKDRIILDLEDRLSSLTRASHQTDSTLNTALNENIKLSKERDQLAATVKKLSRDFAKLETFKKQLMQSLTDDNASHAETIDIGTCDQSVPKAYPDKDDDGSGYMVHHSYNGPADVGKTNDEASRYSGQRFSLTPYITPRLTPTGTPKVISTAGSPREYSAAGSPKKTSGATSPTKLPYDGRTSLSSWYSSSQQSSAANSPPWGRSLPVRTPKIDGKEFFRQARSRLSYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLLNRNAR*

>Glyma08g25630.2   sequence type=predicted peptide   gene model=Glyma08g25630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSQGTGSVVDFDLPDEILSVIPTDPYQQLDLARKITSMAIASRVSSLESDASRLRQKLLEKDRIILDLEDRLSSLTRASHQTDSTLNTALNENIKLSKERDQLAATVKKLSRDFAKLETFKKQLMQSLTDDNASHAETIDIGTCDQSVPKAYPDKDDDGSGYMVHHSYNGPADVGKTNDEASRYSGQRFSLTPYITPRLTPTGTPKVISTAGSPREYSAAGSPKKTSGATSPTKLPYDGRTSLSSWYSSSQQSSAANSPPWGRSLPVRTPKIDGKEFFRQARSRLSYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLLNRNAR*

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