|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G54310 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:20273567-20275449 FORWARD LENGTH=454 | SoyBase | E_val: 0 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| PTHR11061 | Panther | RNA M5U METHYLTRANSFERASE FAMILY | JGI | ISS | |
| PF10672 | PFAM | S-adenosylmethionine-dependent methyltransferase | JGI | ISS | |
| UniRef100_F4HVA0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine-dependent methyltransferase domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4HVA0_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KW47 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KW47_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g25420 not represented in the dataset |
Glyma08g25420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g234700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g25420.2 sequence type=transcript gene model=Glyma08g25420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAGTCATCTCAATATCTCAAACAAGTAATCTTTAATTTGACGGAAAAATATCCGCTCATAAAAAGAAAAGAAAGTATAGGGTGAAAGTCCTTTGGGACTTGGGCGCTGGGGTGATGTATGTAATATATAGGGTAACATAAAAATAGCGAGCGCAACCCTCTCTCCCAGTCTCGGAAGAAGAAATGAAGCAGCTGCCAACGCTGCTGATGAAGTCCCTCTCACTCTCAGTGTGTTCTTTGCCAGCAGCAGCTTCCACAACCACCCTTCAACAAATTGCTCTCCATCAACCCAAAGTTTGTGTTTGGTAGGTGTTGCAAAGGTTGTACTTAAAAAGGGGAAGACACAACTCTTTAAGGATGGCAACCCAATGGTGTACAGTGGAGCTGTTGATAGAATAATTGGGAGGCCACCTCCCAAGACCGGGGATGTTGTTCTGGTAGCAGATGGGACTGAGAAACCAATTGGATGGGGCATGTACAACTCAGTTTCTATGTTCTGTGTTCGGCTCATGCAGCTTGAAGATGAAGCTACTAGCGATTCATCTTGTGCATTGAATATGGAGAAACTGATTGAAACAAGAATTGATGCAGCTGTTGAAATGCGTAGAAGGTTGGGTCTTCCATCAGTCCACACCAATGCATACCGTCTAATCAATAGTGAGGGTGACAGACTATCAGGATTGATAATTGACGTCTTTGGAGGTGTTGCTGTAGTAGCGTCATCTGCTGCTTGGGTTGAGAAATACAAATCAGAGATAGAGGCATGCATCAAGAAAATCAACTATATCAATCATGTAAATTGGAGGCCATCTGTTGATATTTTAAAGGAAGATGGAGTTAATGAATATGATTTAAACAAAATGCATTCATCTACATGTCCTGAAAGAACAAAGATTGTGGAAAATGAAATTGTATACACAATTTCATTGAAGGGCCAGAAGACGGGATTCTATGCAGATCAGCGTGAGAACCGCCAGTTTATATCAAGAATTTCAGATGGTCAAAAGGTTCTTGATATTTGCTGCTATAGTGGCGGTTTTGCTCTAAATGCTGTGCGTGGAGGTGCTCTAAATGTCACCGGTATTGACACATCACCGCTAGCTTTGGAGCTTGCTAAAGAAAATGTTGTACTCAACAACATTGATCCTGGAAGAATATCCTTTTTGAGGGAAGATGCTACTGAATTTATGAAGGGTGCTCTCTTGAGAAATGAATCCTGGGATATTGTCATCATTGATCCTCCTAAACTGGCACCAACAAAAAAGGTTCTACATAGTGCTTCTGGTATGTACAGGAATTTGAATTCACTTGCTATGCAACTTACAAAAAGAGGTGGTCTTCTGATGACATGTTCCTGTTCTGGAGCTGTGACCCAAAGTGGGATATTCATGCGCATCCTTCAGGGTGCAGCATCTATGGCGGGTAGGAGAATCACTGTCCTCAGACAGGCTGGAGCAGCTTGTGATCACCCTATCGATCCATCATACCCAGAAGGAGCATATCTAACCAACATTCTATTGCGAGTTTCATGAGTATTGTATTTGGGGGATTTTCATTCATTTAAGTTTTTTCCCATGTAATTATATATTTTAATGGAACTTTGGAAAGTGCCCTTTCACCGAATTAGTGAAGAAAATGTCTTACACATCAGTTGAAAGAAAAAAATGGGCATAGGTTTGCTTATTTAATTAATAATTATTGTCAAACTATATTTTACCACTGAAAGTGAAAGCTAACATCTCAAATACAATTGGGTGGCTCCTCTAGCCAAAATCAAGGTCGTGATCCTAGCCAAAATCAAGGTCGTGATCCTTAGCATAAAATGCCAAATGGTCAGCTACAGAACAAGGAAAGAAATCCTGTTTTTCAAGGAAAAGTACCACTTTCACTATTGATTCATCCGTTCAATGGTTTATATTGTGTCATTTGTCAATAAATAAAGTGATTTTTTTTTCTGGGCTCTCATCCATTCTTCATATTGGTGCTGAGAGTGTTGCTGCCTGCGTCTCTTTTTTGGCTTCCAGAATAATCAATCTAAAAGATAAAAAAAGCATTCCAAAATGAATGCAAGAATCCGGGTGGTGAACTTAATTGTGCCTTTAACTTGTTCCTTTTATTTTAATCCAAATTCATGCGCTTTGTTTTTGGATGGAATTGAAAG >Glyma08g25420.3 sequence type=transcript gene model=Glyma08g25420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAGTCATCTCAATATCTCAAACAAGTAATCTTTAATTTGACGGAAAAATATCCGCTCATAAAAAGAAAAGAAAGTATAGGGTGAAAGTCCTTTGGGACTTGGGCGCTGGGGTGATGTATGTAATATATAGGGTAACATAAAAATAGCGAGCGCAACCCTCTCTCCCAGTCTCGGAAGAAGAAATGAAGCAGCTGCCAACGCTGCTGATGAAGTCCCTCTCACTCTCAGTGTGTTCTTTGCCAGCAGCAGCTTCCACAACCACCCTTCAACAAATTGCTCTCCATCAACCCAAAGGTGTTGCAAAGGTTGTACTTAAAAAGGGGAAGACACAACTCTTTAAGGATGGCAACCCAATGGTGTACAGTGGAGCTGTTGATAGAATAATTGGGAGGCCACCTCCCAAGACCGGGGATGTTGTTCTGGTAGCAGATGGGACTGAGAAACCAATTGGATGGGGCATGTACAACTCAGTTTCTATGTTCTGTGTTCGGCTCATGCAGCTTGAAGATGAAGCTACTAGCGATTCATCTTGTGCATTGAATATGGAGAAACTGATTGAAACAAGAATTGATGCAGCTGTTGAAATGCGTAGAAGGTTGGGTCTTCCATCAGTCCACACCAATGCATACCGTCTAATCAATAGTGAGGGTGACAGACTATCAGGATTGATAATTGACGTCTTTGGAGGTGTTGCTGTAGTAGCGTCATCTGCTGCTTGGGTTGAGAAATACAAATCAGAGATAGAGGCATGCATCAAGAAAATCAACTATATCAATCATGTAAATTGGAGGCCATCTGTTGATATTTTAAAGGAAGATGGAGTTAATGAATATGATTTAAACAAAATGCATTCATCTACATGTCCTGAAAGAACAAAGATTGTGGAAAATGAAATTGTATACACAATTTCATTGAAGGGCCAGAAGACGGGATTCTATGCAGATCAGCGTGAGAACCGCCAGTTTATATCAAGAATTTCAGATGGTCAAAAGGTTCTTGATATTTGCTGCTATAGTGGCGGTTTTGCTCTAAATGCTGTGCGTGGAGGTGCTCTAAATGTCACCGGTATTGACACATCACCGCTAGCTTTGGAGCTTGCTAAAGAAAATGTTGTACTCAACAACATTGATCCTGGAAGAATATCCTTTTTGAGGGAAGATGCTACTGAATTTATGAAGGGTGCTCTCTTGAGAAATGAATCCTGGGATATTGTCATCATTGATCCTCCTAAACTGGCACCAACAAAAAAGGTTCTACATAGTGCTTCTGGTATGTACAGGAATTTGAATTCACTTGCTATGCAACTTACAAAAAGAGGTGGTCTTCTGATGACATGTTCCTGTTCTGGAGCTGTGACCCAAAGTGGGATATTCATGCGCATCCTTCAGGGTGCAGCATCTATGGCGGGTAGGAGAATCACTGTCCTCAGACAGGCTGGAGCAGCTTGTGATCACCCTATCGATCCATCATACCCAGAAGGAGCATATCTAACCAACATTCTATTGCGAGTTTCATGAGTATTGTATTTGGGGGATTTTCATTCATTTAAGTTTTTTCCCATGTAATTATATATTTTAATGGAACTTTGGAAAGTGCCCTTTCACCGAATTAGTGAAGAAAATGTCTTACACATCAGTTGAAAGAAAAAAATGGGCATAGGTTTGCTTATTTAATTAATAATTATTGTCAAACTATATTTTACCACTGAAAGTGAAAGCTAACATCTCAAATACAATTGGGTGGCTCCTCTAGCCAAAATCAAGGTCGTGATCCTTAGCAT
>Glyma08g25420.1 sequence type=CDS gene model=Glyma08g25420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCAGCTGCCAACGCTGCTGATGAAGTCCCTCTCACTCTCAGTGTGTTCTTTGCCAGCAGCAGCTTCCACAACCACCCTTCAACAAATTGCTCTCCATCAACCCAAAGGTGTTGCAAAGGTTGTACTTAAAAAGGGGAAGACACAACTCTTTAAGGATGGCAACCCAATGGTGTACAGTGGAGCTGTTGATAGAATAATTGGGAGGCCACCTCCCAAGACCGGGGATGTTGTTCTGGTAGCAGATGGGACTGAGAAACCAATTGGATGGGGCATGTACAACTCAGTTTCTATGTTCTGTGTTCGGCTCATGCAGCTTGAAGATGAAGCTACTAGCGATTCATCTTGTGCATTGAATATGGAGAAACTGATTGAAACAAGAATTGATGCAGCTGTTGAAATGCGTAGAAGGTTGGGTCTTCCATCAGTCCACACCAATGCATACCGTCTAATCAATAGTGAGGGTGACAGACTATCAGGATTGATAATTGACGTCTTTGGAGGTGTTGCTGTAGTAGCGTCATCTGCTGCTTGGGTTGAGAAATACAAATCAGAGATAGAGGCATGCATCAAGAAAATCAACTATATCAATCATGTAAATTGGAGGCCATCTGTTGATATTTTAAAGGAAGATGGAGTTAATGAATATGATTTAAACAAAATGCATTCATCTACATGTCCTGAAAGAACAAAGATTGTGGAAAATGAAATTGTATACACAATTTCATTGAAGGGCCAGAAGACGGGATTCTATGCAGATCAGCGTGAGAACCGCCAGTTTATATCAAGAATTTCAGATGGTCAAAAGGTTCTTGATATTTGCTGCTATAGTGGCGGTTTTGCTCTAAATGCTGTGCGTGGAGGTGCTCTAAATGTCACCGGTATTGACACATCACCGCTAGCTTTGGAGCTTGCTAAAGAAAATGTTGTACTCAACAACATTGATCCTGGAAGAATATCCTTTTTGAGGGAAGATGCTACTGAATTTATGAAGGGTGCTCTCTTGAGAAATGAATCCTGGGATATTGTCATCATTGATCCTCCTAAACTGGCACCAACAAAAAAGGTTCTACATAGTGCTTCTGGTATGTACAGGAATTTGAATTCACTTGCTATGCAACTTACAAAAAGAGGTGGTCTTCTGATGACATGTTCCTGTTCTGGAGCTGTGACCCAAAGTGGGATATTCATGCGCATCCTTCAGGGTGCAGCATCTATGGCGGGTAGGAGAATCACTGTCCTCAGACAGGCTGGAGCAGCTTGTGATCACCCTATCGATCCATCATACCCAGAAGGAGCATATCTAACCAACATTCTATTGCGAGTTTCATGA >Glyma08g25420.2 sequence type=CDS gene model=Glyma08g25420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTACAGTGGAGCTGTTGATAGAATAATTGGGAGGCCACCTCCCAAGACCGGGGATGTTGTTCTGGTAGCAGATGGGACTGAGAAACCAATTGGATGGGGCATGTACAACTCAGTTTCTATGTTCTGTGTTCGGCTCATGCAGCTTGAAGATGAAGCTACTAGCGATTCATCTTGTGCATTGAATATGGAGAAACTGATTGAAACAAGAATTGATGCAGCTGTTGAAATGCGTAGAAGGTTGGGTCTTCCATCAGTCCACACCAATGCATACCGTCTAATCAATAGTGAGGGTGACAGACTATCAGGATTGATAATTGACGTCTTTGGAGGTGTTGCTGTAGTAGCGTCATCTGCTGCTTGGGTTGAGAAATACAAATCAGAGATAGAGGCATGCATCAAGAAAATCAACTATATCAATCATGTAAATTGGAGGCCATCTGTTGATATTTTAAAGGAAGATGGAGTTAATGAATATGATTTAAACAAAATGCATTCATCTACATGTCCTGAAAGAACAAAGATTGTGGAAAATGAAATTGTATACACAATTTCATTGAAGGGCCAGAAGACGGGATTCTATGCAGATCAGCGTGAGAACCGCCAGTTTATATCAAGAATTTCAGATGGTCAAAAGGTTCTTGATATTTGCTGCTATAGTGGCGGTTTTGCTCTAAATGCTGTGCGTGGAGGTGCTCTAAATGTCACCGGTATTGACACATCACCGCTAGCTTTGGAGCTTGCTAAAGAAAATGTTGTACTCAACAACATTGATCCTGGAAGAATATCCTTTTTGAGGGAAGATGCTACTGAATTTATGAAGGGTGCTCTCTTGAGAAATGAATCCTGGGATATTGTCATCATTGATCCTCCTAAACTGGCACCAACAAAAAAGGTTCTACATAGTGCTTCTGGTATGTACAGGAATTTGAATTCACTTGCTATGCAACTTACAAAAAGAGGTGGTCTTCTGATGACATGTTCCTGTTCTGGAGCTGTGACCCAAAGTGGGATATTCATGCGCATCCTTCAGGGTGCAGCATCTATGGCGGGTAGGAGAATCACTGTCCTCAGACAGGCTGGAGCAGCTTGTGATCACCCTATCGATCCATCATACCCAGAAGGAGCATATCTAACCAACATTCTATTGCGAGTTTCATGA >Glyma08g25420.3 sequence type=CDS gene model=Glyma08g25420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCAGCTGCCAACGCTGCTGATGAAGTCCCTCTCACTCTCAGTGTGTTCTTTGCCAGCAGCAGCTTCCACAACCACCCTTCAACAAATTGCTCTCCATCAACCCAAAGGTGTTGCAAAGGTTGTACTTAAAAAGGGGAAGACACAACTCTTTAAGGATGGCAACCCAATGGTGTACAGTGGAGCTGTTGATAGAATAATTGGGAGGCCACCTCCCAAGACCGGGGATGTTGTTCTGGTAGCAGATGGGACTGAGAAACCAATTGGATGGGGCATGTACAACTCAGTTTCTATGTTCTGTGTTCGGCTCATGCAGCTTGAAGATGAAGCTACTAGCGATTCATCTTGTGCATTGAATATGGAGAAACTGATTGAAACAAGAATTGATGCAGCTGTTGAAATGCGTAGAAGGTTGGGTCTTCCATCAGTCCACACCAATGCATACCGTCTAATCAATAGTGAGGGTGACAGACTATCAGGATTGATAATTGACGTCTTTGGAGGTGTTGCTGTAGTAGCGTCATCTGCTGCTTGGGTTGAGAAATACAAATCAGAGATAGAGGCATGCATCAAGAAAATCAACTATATCAATCATGTAAATTGGAGGCCATCTGTTGATATTTTAAAGGAAGATGGAGTTAATGAATATGATTTAAACAAAATGCATTCATCTACATGTCCTGAAAGAACAAAGATTGTGGAAAATGAAATTGTATACACAATTTCATTGAAGGGCCAGAAGACGGGATTCTATGCAGATCAGCGTGAGAACCGCCAGTTTATATCAAGAATTTCAGATGGTCAAAAGGTTCTTGATATTTGCTGCTATAGTGGCGGTTTTGCTCTAAATGCTGTGCGTGGAGGTGCTCTAAATGTCACCGGTATTGACACATCACCGCTAGCTTTGGAGCTTGCTAAAGAAAATGTTGTACTCAACAACATTGATCCTGGAAGAATATCCTTTTTGAGGGAAGATGCTACTGAATTTATGAAGGGTGCTCTCTTGAGAAATGAATCCTGGGATATTGTCATCATTGATCCTCCTAAACTGGCACCAACAAAAAAGGTTCTACATAGTGCTTCTGGTATGTACAGGAATTTGAATTCACTTGCTATGCAACTTACAAAAAGAGGTGGTCTTCTGATGACATGTTCCTGTTCTGGAGCTGTGACCCAAAGTGGGATATTCATGCGCATCCTTCAGGGTGCAGCATCTATGGCGGGTAGGAGAATCACTGTCCTCAGACAGGCTGGAGCAGCTTGTGATCACCCTATCGATCCATCATACCCAGAAGGAGCATATCTAACCAACATTCTATTGCGAGTTTCATGA
>Glyma08g25420.1 sequence type=predicted peptide gene model=Glyma08g25420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQLPTLLMKSLSLSVCSLPAAASTTTLQQIALHQPKGVAKVVLKKGKTQLFKDGNPMVYSGAVDRIIGRPPPKTGDVVLVADGTEKPIGWGMYNSVSMFCVRLMQLEDEATSDSSCALNMEKLIETRIDAAVEMRRRLGLPSVHTNAYRLINSEGDRLSGLIIDVFGGVAVVASSAAWVEKYKSEIEACIKKINYINHVNWRPSVDILKEDGVNEYDLNKMHSSTCPERTKIVENEIVYTISLKGQKTGFYADQRENRQFISRISDGQKVLDICCYSGGFALNAVRGGALNVTGIDTSPLALELAKENVVLNNIDPGRISFLREDATEFMKGALLRNESWDIVIIDPPKLAPTKKVLHSASGMYRNLNSLAMQLTKRGGLLMTCSCSGAVTQSGIFMRILQGAASMAGRRITVLRQAGAACDHPIDPSYPEGAYLTNILLRVS* >Glyma08g25420.2 sequence type=predicted peptide gene model=Glyma08g25420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVYSGAVDRIIGRPPPKTGDVVLVADGTEKPIGWGMYNSVSMFCVRLMQLEDEATSDSSCALNMEKLIETRIDAAVEMRRRLGLPSVHTNAYRLINSEGDRLSGLIIDVFGGVAVVASSAAWVEKYKSEIEACIKKINYINHVNWRPSVDILKEDGVNEYDLNKMHSSTCPERTKIVENEIVYTISLKGQKTGFYADQRENRQFISRISDGQKVLDICCYSGGFALNAVRGGALNVTGIDTSPLALELAKENVVLNNIDPGRISFLREDATEFMKGALLRNESWDIVIIDPPKLAPTKKVLHSASGMYRNLNSLAMQLTKRGGLLMTCSCSGAVTQSGIFMRILQGAASMAGRRITVLRQAGAACDHPIDPSYPEGAYLTNILLRVS* >Glyma08g25420.3 sequence type=predicted peptide gene model=Glyma08g25420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQLPTLLMKSLSLSVCSLPAAASTTTLQQIALHQPKGVAKVVLKKGKTQLFKDGNPMVYSGAVDRIIGRPPPKTGDVVLVADGTEKPIGWGMYNSVSMFCVRLMQLEDEATSDSSCALNMEKLIETRIDAAVEMRRRLGLPSVHTNAYRLINSEGDRLSGLIIDVFGGVAVVASSAAWVEKYKSEIEACIKKINYINHVNWRPSVDILKEDGVNEYDLNKMHSSTCPERTKIVENEIVYTISLKGQKTGFYADQRENRQFISRISDGQKVLDICCYSGGFALNAVRGGALNVTGIDTSPLALELAKENVVLNNIDPGRISFLREDATEFMKGALLRNESWDIVIIDPPKLAPTKKVLHSASGMYRNLNSLAMQLTKRGGLLMTCSCSGAVTQSGIFMRILQGAASMAGRRITVLRQAGAACDHPIDPSYPEGAYLTNILLRVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||