SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G44550 | AT | Annotation by Michelle Graham. TAIR10: fatty acid reductase 5 | chr3:16138060-16141409 FORWARD LENGTH=496 | SoyBase | E_val: 6.00E-128 | ISS |
| GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010345 | GO-bp | Annotation by Michelle Graham. GO Biological Process: suberin biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0016620 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0016627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors | SoyBase | N/A | ISS |
| GO:0050062 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: long-chain-fatty-acyl-CoA reductase activity | SoyBase | N/A | ISS |
| KOG1221 | KOG | Acyl-CoA reductase | JGI | ISS | |
| PTHR11011 | Panther | MALE STERILITY PROTEIN 2-RELATED | JGI | ISS | |
| PTHR11011:SF1 | Panther | MALE STERILITY PROTEIN 2 | JGI | ISS | |
| PF07993 | PFAM | Male sterility protein | JGI | ISS | |
| UniRef100_B9SST7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Male sterility protein, putative n=1 Tax=Ricinus communis RepID=B9SST7_RICCO | SoyBase | E_val: 4.00E-147 | ISS |
| UniRef100_I1KW31 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KW31_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g25140 not represented in the dataset |
Glyma08g25140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g233200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g25140.1 sequence type=CDS gene model=Glyma08g25140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTGTGGAGAAGATATTAAGAGTTCAACCTGACATAAAAAAGTTATACCTTCTATTGAGAGCATCAAATCCTTATTTAGCTACTCACCGCTTGCAAAATGAGGTCATTGGGAAGGACATATTTCGGGTGCTACGTGATAAGTGGGGTGCAGATTTTGGTTCTTTTATATCAAAGAAAGTGGTAGCAGTTGCTGGTGATGTTTCTCTTAACAACTTGGGAATTAAAGACGAAAACATGAGGAGCCAGATGTTTGAAGAGTTAAATGTTATAGTACACACCGCTGCAACTACCAATTTTAACGAGAGATATGATATTGCGATAGGTACTAACACGATGGGAGCTTTTCATGTTGTGAACTTCGCTAAAAGTTGTCATAAATTAGGGATTGTTCTCCATGTATCTACTGCCTACGTGTGTGGGGAGGCCGAAGGACTTATAGTTGAGGAACCCTTACATGTCAATGGAATGCAAAAAGGATCTACAAAATTAGATATCGAGTTAGAAAAACAGTTGATTGAAGAAAAACTGAAAGAGTTCAAAGCACATAACACTGATAAAGAAGTAATCACATCGGTTATGAAAAGTTTTGGACTTGCAAGGGCAAATTTACATGGCTGGCCAAACACCTATGTGTTCACCAAAGCAATGGGAGAAATACTTTTAATGAAAATGAAAGACACTCTCCCATTGTTCGTTATACGCCCCACTACGGTCGTCAGCACACACTCTGAACCTTTTCCAGGTTGGATTGAAGGTGTCAGAACTATAGACTTTGTGGTGGTTAATTATGGTCAGGGAATACTAACAAGCTTTGTTGGAAATTCAGAAACAATTTTAGATTTGATTCCAGTAGACATGGTGGTAAATTTCATGATAGTGGCATTGATGGCTTTGTCCAAAGGTCTGTCCAAAAATTTGGTGTACCATATTGGATCTTCATTGAGAAATCCTATCAAATTAACTGATGTTGTAGATGCTATGTATTACTACTTCAAAAAAAATCCATGTGTTGATAAATATGGAAAGCTAATGGCTGTTACCAAGAAACTAACTATAACAGGAGCAAATGAGTTCAATCAAAATAAGGGGTCGAAGTTGGTGAAGAAAACTGAAGATTTGTACAAAACTTATTCCCTCTTCAAGGGCATCTTCGACGTCAAGAATGCTGAAAGTTTAAGAATAGTAACAAAGGGGTTGCTAATGTGGATGGTGAATTTGACTTTGATCCAGAGAACATTAATTGGAAAGACTACATGA
>Glyma08g25140.1 sequence type=predicted peptide gene model=Glyma08g25140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high SVEKILRVQPDIKKLYLLLRASNPYLATHRLQNEVIGKDIFRVLRDKWGADFGSFISKKVVAVAGDVSLNNLGIKDENMRSQMFEELNVIVHTAATTNFNERYDIAIGTNTMGAFHVVNFAKSCHKLGIVLHVSTAYVCGEAEGLIVEEPLHVNGMQKGSTKLDIELEKQLIEEKLKEFKAHNTDKEVITSVMKSFGLARANLHGWPNTYVFTKAMGEILLMKMKDTLPLFVIRPTTVVSTHSEPFPGWIEGVRTIDFVVVNYGQGILTSFVGNSETILDLIPVDMVVNFMIVALMALSKGLSKNLVYHIGSSLRNPIKLTDVVDAMYYYFKKNPCVDKYGKLMAVTKKLTITGANEFNQNKGSKLVKKTEDLYKTYSLFKGIFDVKNAESLRIVTKGLLMWMVNLTLIQRTLIGKTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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