SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40770 | AT | Annotation by Michelle Graham. TAIR10: prohibitin 3 | chr5:16315589-16316621 REVERSE LENGTH=277 | SoyBase | E_val: 5.00E-174 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0007005 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrion organization | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0048527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root development | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0071731 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitric oxide | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005747 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| KOG3083 | KOG | Prohibitin | JGI | ISS | |
| PTHR23222 | Panther | PROHIBITIN | JGI | ISS | |
| PF01145 | PFAM | SPFH domain / Band 7 family | JGI | ISS | |
| UniRef100_G7IVL7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Prohibitin n=2 Tax=Medicago truncatula RepID=G7IVL7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KW20 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KW20_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g24950 not represented in the dataset |
Glyma08g24950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g232000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g24950.1 sequence type=CDS gene model=Glyma08g24950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGCCAGCAAGCCGCCGTGTCGTTCCTGACGAACCTGGCCCGCGCCGCTTTCGGGCTGGGCGCCTCCGCGACCCTATTGAGCTCCTCCCTCTACACCGTCGATGGCGGGCAGCGCGCCGTCCTCTTCGACCGTTTCCGGGGCATCCTCGACGAGACCGTCGGCGAGGGGACCCACTTCCTCATCCCGTGGGTCCAGAAACCCTACATCTTCGACATCCGCACCCGCCCCCACACCTTCTCCTCCGTCTCCGGAACAAAAGACCTCCAGATGGTTAACCTAACCCTCCGCGTCCTCTCCCGCCCCGACACCGACAAGCTCTCCCTCATCGTCCAGAACCTGGGCCTCGAGTACGACGAGAAAGTCCTCCCCTCCATCGGCAACGAGGTTCTCAAAGCCGTCGTCGCGCAGTTCAACGCCGACCAGCTCCTCACCGACCGTCCCCACGTGTCGGCGCTCGTGCGCGACGGCTTAATCCGTCGCGCACGAGACTTTAACATTTTACTCGATGACGTTGCGATCACGCATCTGTCTTATGGCGCGGAGTTTTCTCGTGCCGTGGAGCAGAAGCAGGTGGCTCAGCAGGAGGCCGAGAGGTCGAAGTTTGTGGTGATGAAGGCCGAGCAGGAGAGGCGGGCGGCGATTATTAGGGCGGAGGGAGAGAGTGACGCGGCGAAGCTGATTTCGGATGCCACTGCGTCCGCCGGGATGGGGCTGATTGAGCTCAGGAGGATTGAGGCGTCTAGGGAGGTCGCTGCCACGCTGGCCAAGTCGCCGAACGTGGCCTACTTGCCTGGAGGGAAGAACTTGCTCATGGCGCTCAATGCCGGTGGACGTTGA
>Glyma08g24950.1 sequence type=predicted peptide gene model=Glyma08g24950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSQQAAVSFLTNLARAAFGLGASATLLSSSLYTVDGGQRAVLFDRFRGILDETVGEGTHFLIPWVQKPYIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPDTDKLSLIVQNLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTDRPHVSALVRDGLIRRARDFNILLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESDAAKLISDATASAGMGLIELRRIEASREVAATLAKSPNVAYLPGGKNLLMALNAGGR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
