Glyma08g24930 - SoyBase

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Report for Sequence Feature Glyma08g24930

Feature Type:	gene_model
Chromosome:	Gm08
Start:	19118717
stop:	19120629
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g24930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00860	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1138) \| chr4:359548-359868 REVERSE LENGTH=80	SoyBase	E_val: 2.00E-36	ISS
GO:0000302	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0010193	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ozone	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06592	PFAM	Protein of unknown function (DUF1138)	JGI		ISS
UniRef100_B9S0H2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATOZI1, putative n=1 Tax=Ricinus communis RepID=B9S0H2_RICCO	SoyBase	E_val: 4.00E-36	ISS
UniRef100_I1KW16	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KW16_SOYBN	SoyBase	E_val: 9.00E-55	ISS

Expression Patterns of Glyma08g24930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g24930

Paralog	Evidence	Comments
Glyma15g31250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g24930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g231900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g24930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g24930

Limit To All Plant Sequences

>Glyma08g24930.4   sequence type=transcript   gene model=Glyma08g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAACCTAATCGCACCCCGGTTCCGATTGCATCTGTCTGTCTGCGTTTTTTTCTTTGCCTTGTTTTTGTTTTTTACTTTAAATTTTGGGGGTGTTTTCGGATTATGCTTTGCGATTCTCTGAGTTTCTTGTCCTTTCCCTTTCTTTCTAGGAATCAATTCTGAGAAGCATTGACGTTCAACAGGTTGCTTCGAAGTGAAGTCTGTAATCATGTCAAGCAAGTATATCATTTCTGCTATTCTTGGATCATTTGGAGTTGCATGGGTTTGTGATTATTATGTTTCAGAGAAGAAGCTATTTGGAGGTAGTACCCCTGGCACTATTACAAACAATGAGTGGGCAGAAGAGACTGACAAAAAATTGCAGGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAATCCCATAAGTCGCCAAAATTTCATTGTGAAGTCTCGCCCTGAGTAATAATTTTTGTTGATTGATTGTGAGTTAATTGATGCACCTTGGTCATGGGATATGTTTCCATAAATGATGATAATGTTTGAGGTAAAAGTCTTGCAGTTCAATTAGTGTTTTGATTTTTAAACATGTGAATGCTTACTTGCTAAATAAAATGTTATTTAAGAAATCATGGATTGATTAATGCATATTCATGTATTCAAATTCTATGTTTAGTCTTTACCTTGGTATGAATAGGAATCAATGCCTAAAATTATGTTTAGC

>Glyma08g24930.5   sequence type=transcript   gene model=Glyma08g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTTTCTTAATTTTAGGATAAAAATGAATATTTATTCAGTAAAATTTGTTAAACTTCACTTAACATTTTCAACCAAAAAAAATAAACTTCACCTAGCATAACCTAATCGCACCCCGGTTCCGATTGCATCTGAATCAATTCTGAGAAGCATTGACGTTCAACAGGTTGCTTCGAAGTGAAGTCTGTAATCATGTCAAGCAAGTATATCATTTCTGCTATTCTTGGATCATTTGGAGTTGCATGGGTTTGTGATTATTATGTTTCAGAGAAGAAGCTATTTGGAGGTAGTACCCCTGGCACTATTACAAACAATGAGTGGGCAGAAGAGACTGACAAAAAATTGCAGGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAATCCCATAAGTCGCCAAAATTTCATTGTGAAGTCTCGCCCTGAGTAATAATTTTTGTTGATTGATTGTGAGTTAATTGATGCACCTTGGTCATGGGATATGTTTCCATAAATGATGATAATGTTTGAGGTAAAAGTCTTGCAGTTCAATTAGTGTTTTGATTTTTAAACATGTGAATGCTTACTTGCTAAATAAAATGTTATTTAAGAAATCATGGATTGATTAATGCATATTCATGTATTCAAATTCTATGTTTAGTCTTTACCTTGGTATGAATAGGAATCAATGCCTAAAATTATGTTTAGC

>Glyma08g24930.6   sequence type=transcript   gene model=Glyma08g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAACCTAATCGCACCCCGGTTCCGATTGCATCTGAATCAATTCTGAGAAGCATTGACGTTCAACAGGTTGCTTCGAAGTCTGTAATCATGTCAAGCAAGTATATCATTTCTGCTATTCTTGGATCATTTGGAGTTGCATGGGTTTGTGATTATTATGTTTCAGAGAAGAAGCTATTTGGAGGTAGTACCCCTGGCACTATTACAAACAATGAGTGGGCAGAAGAGACTGACAAAAAATTGCAGGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAATCCCATAAGTCGCCAAAATTTCATTGTGAAGTCTCGCCCTGAGTAATAATTTTTGTTGATTGATTGTGAGTTAATTGATGCACCTTGGTCATGGGATATGTTTCCATAAATGATGATAATGTTTGAGGTAAAAGTCTTGCAGTTCAATTAGTGTTTTGATTTTTAAACATGTGAATGCTTACTTGCTAAATAAAATGTTATTTAAGAAATCATGGATTGATTAATGCATATTCATGTATTCAAATTCTATGTTTAGTCTTTACCTTGGTATGAATAGGAATCAATGCCTAAAATTATGTTTAGC

Coding sequences of Glyma08g24930

Limit To All Plant Sequences

>Glyma08g24930.1   sequence type=CDS   gene model=Glyma08g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTCTGTAATCATGTCAAGCAAGTATATCATTTCTGCTATTCTTGGATCATTTGGAGTTGCATGGGTTTGTGATTATTATGTTTCAGAGAAGAAGCTATTTGGAGGTAGTACCCCTGGCACTATTACAAACAATGAGTGGGCAGAAGAGACTGACAAAAAATTGCAGGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAATCCCATAAGTCGCCAAAATTTCATTGTGAAGTCTCGCCCTGAGTAA

>Glyma08g24930.4   sequence type=CDS   gene model=Glyma08g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGCAAGTATATCATTTCTGCTATTCTTGGATCATTTGGAGTTGCATGGGTTTGTGATTATTATGTTTCAGAGAAGAAGCTATTTGGAGGTAGTACCCCTGGCACTATTACAAACAATGAGTGGGCAGAAGAGACTGACAAAAAATTGCAGGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAATCCCATAAGTCGCCAAAATTTCATTGTGAAGTCTCGCCCTGAGTAA

>Glyma08g24930.5   sequence type=CDS   gene model=Glyma08g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGCAAGTATATCATTTCTGCTATTCTTGGATCATTTGGAGTTGCATGGGTTTGTGATTATTATGTTTCAGAGAAGAAGCTATTTGGAGGTAGTACCCCTGGCACTATTACAAACAATGAGTGGGCAGAAGAGACTGACAAAAAATTGCAGGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAATCCCATAAGTCGCCAAAATTTCATTGTGAAGTCTCGCCCTGAGTAA

>Glyma08g24930.6   sequence type=CDS   gene model=Glyma08g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGCAAGTATATCATTTCTGCTATTCTTGGATCATTTGGAGTTGCATGGGTTTGTGATTATTATGTTTCAGAGAAGAAGCTATTTGGAGGTAGTACCCCTGGCACTATTACAAACAATGAGTGGGCAGAAGAGACTGACAAAAAATTGCAGGCATGGCCTCGTACTGCCGGTCCACCAGTGGTCATGAATCCCATAAGTCGCCAAAATTTCATTGTGAAGTCTCGCCCTGAGTAA

Predicted protein sequences of Glyma08g24930

Limit To All Plant Sequences

>Glyma08g24930.1   sequence type=predicted peptide   gene model=Glyma08g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSVIMSSKYIISAILGSFGVAWVCDYYVSEKKLFGGSTPGTITNNEWAEETDKKLQAWPRTAGPPVVMNPISRQNFIVKSRPE*

>Glyma08g24930.4   sequence type=predicted peptide   gene model=Glyma08g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKYIISAILGSFGVAWVCDYYVSEKKLFGGSTPGTITNNEWAEETDKKLQAWPRTAGPPVVMNPISRQNFIVKSRPE*

>Glyma08g24930.5   sequence type=predicted peptide   gene model=Glyma08g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKYIISAILGSFGVAWVCDYYVSEKKLFGGSTPGTITNNEWAEETDKKLQAWPRTAGPPVVMNPISRQNFIVKSRPE*

>Glyma08g24930.6   sequence type=predicted peptide   gene model=Glyma08g24930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKYIISAILGSFGVAWVCDYYVSEKKLFGGSTPGTITNNEWAEETDKKLQAWPRTAGPPVVMNPISRQNFIVKSRPE*

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