SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G15850 | AT | Annotation by Michelle Graham. TAIR10: RNA helicase 1 | chr4:9001426-9004534 FORWARD LENGTH=522 | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| GO:0017151 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DEAD/H-box RNA helicase binding | SoyBase | N/A | ISS |
| KOG0350 | KOG | DEAD-box ATP-dependent RNA helicase | JGI | ISS | |
| PTHR24031 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24031:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF00642 | PFAM | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | JGI | ISS | |
| UniRef100_G7KG11 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DEAD-box ATP-dependent RNA helicase n=1 Tax=Medicago truncatula RepID=G7KG11_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337C8F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337C8F related cluster n=1 Tax=unknown RepID=UPI0002337C8F | SoyBase | E_val: 0 | ISS |
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Glyma08g24875 not represented in the dataset |
Glyma08g24875 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g10460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g231300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g24875.2 sequence type=transcript gene model=Glyma08g24875 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACATAAAAAGTTATCTTACTAGATATGCGTGTGTTACATTGAAATAATAATTTTAGGGATTCCATTTGGATACTACCTAGAGCCGTCCCTTTCCACTGTTGATCGATTTCCTCCGTCTTCGAAGACAACTCTGTGACCCAGCGTCCCATTTGGTCTTCACCCAGAGTTCAATCGTAGGAACTGCTAGGGGCTTTTATTTTGCCTTTATCGATTTTCAACACACGGACGAAGGGCACAGCTTGCTTGCGGCTTCAATATCTGCTAACCAAACCCTTAGTCATCTGGGATTTAAAGGGTTGGTGTTGAGCAGATAGAGATGAACCCGCCAACACTAGTGAAGCGCACTCAGAACATCAATGCCAGAGAAGCTGCACTCAGCATCGGCGACCATGCCTCCTGGCACACCAAGTACAAGGATTCCGCTTACATCTTCGTCGGTGGCATCCCCTTCGATCTCACCGAGGGTGACCTCCTCCCCGTTTTTGCTCAATACGGAGAGGTTGTTGATGTTAACCTAGTTAGGGACAAAGGTACCGGAAAATCCAAGGATTTTGCGTTCCTTGCGTATGAGGATCAGAGGAGCGCGGATCTTGCTGTGGATAATTTGAACGGGGCACAGGTTTTGGGGAGAATTATTAAGGTGGACCATGTTGATAAGTATAAGAAGAAGGAGGAGGAGGATGAAGAGACAGAGCGGCTGAAGAGGGAGGCACGTGGCGTTTGCCGTGCTTTCCAAAGAGGTGAATGCACTCGGGGAGCTAGCTGCAAGTTTTCTCATGATGAGCAAGCATGCCTTATTCATATACACGCGGTTCTGCCATGGATGCGTCACCCTGTCGACATCACTCGCTGTCCAGAACTCCCCGTCTGTAGTGTTCCTTTGATGAAACGCAGGTTACAGTCGGTACTGGAGGAGAACATGGGAATTTCCAAGCTGTTCCCTGTTCAGGTCGCACTTTGGCAAGAAACGGTTGGACCGGGTGACTTTGAGCGAGACCTTTGCATAAACTCGCCCACCGGAAGTGGCAAAACCTTGGCCTATGCTCTTCCCATCGTTCAAAACTTGTTCACCAACCCCGGTGGCCGCCTCCGTGCTTTGGTTGTAGTTCCCACCCGCGACCTTGCTTTGCAGGTTAAGCGCGTCTTCGACGCCCTTGCATCGCCGCTGGGTCTCCGTATTGGCTTGGCTGCTGGTCAATCTTCGCTTCGCCACGAGCTTTCTAGCCTCATTTATCTACCTGGAGAAGACGATGGTCCAGATCCTGGGTTTTTGTCTCCGTTGTGGTTCCAAAGCAAGGTCGACATATTGGTAGCGACCCCTGGAAGGCTAGTGGACCATGTCAACAAGTTGTCATTGAAGCATCTTCGTTATCTCGTGGTTGACGAAGCAGATCGATTGCTACGTGAGGACTACCAGTCCTGGTTACCTACTGTGCTTAAATTAACTCAGTCTAGGCTGGCAAAGATAGTTTTATCTGCTACGTTAACTCGGGACCCAGGAAGACTTGCTCAACTTAATTTGCATCACCCTTTATTCCTGAGTGCTGGGAAAATGCGTTATCGGCTCCCAGAATATTTGGAATGTTACAAACTGATCTGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGAATCAACACATCATCTCTGCAAATTGCTAAATTGTTTTGGTGATCTGAAAATTGGTATCAAGGAGTTTTCTGGTCTAAAACATCAACGGGTAAGAAGCAAGACAGTGGGTGAATTTCGGAGAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACACAAAGACGTATGTTCATCGAGCTGGTAGAACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTCAAAAGATGAGGTTGGAGGATTTAAGAAGTTGATGAAAAAGGCTGAGGCTAGTGATTGTCTTGAGTATACTGTTCCATCCAGTTTGATTGAAGCGCTTCATAGTACCTACCAATCAGCACTGACAAAATTGAAGGAGAAAATTCTGGAGTCCCGGAGAAAACCAAGGATAAGTCTTGTCAATCGATCAAAGTGAGAACAAATATTCACGAGAATAGTTTTGCCTATGAACGGATATACAAGAGATTCTTTTACTGTACATTTTATGATTTAATTAGAATGATAATATTATGTTTTTTTGGGTTACATATTATTTATTTTCACCACTATTTTTTGTTTAATATAAAAAGAAATTAATATTATGCTACTCGTATATTTGTTTACTTTACAAAGGAGAATGTCTTCATTTTATTGTTTATGAT
>Glyma08g24875.1 sequence type=CDS gene model=Glyma08g24875 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCCGCCAACACTAGTGAAGCGCACTCAGAACATCAATGCCAGAGAAGCTGCACTCAGCATCGGCGACCATGCCTCCTGGCACACCAAGTACAAGGATTCCGCTTACATCTTCGTCGGTGGCATCCCCTTCGATCTCACCGAGGGTGACCTCCTCCCCGTTTTTGCTCAATACGGAGAGGTTGTTGATGTTAACCTAGTTAGGGACAAAGGTACCGGAAAATCCAAGGATTTTGCGTTCCTTGCGTATGAGGATCAGAGGAGCGCGGATCTTGCTGTGGATAATTTGAACGGGGCACAGGTTTTGGGGAGAATTATTAAGGTGGACCATGTTGATAAGTATAAGAAGAAGGAGGAGGAGGATGAAGAGACAGAGCGGCTGAAGAGGGAGGCACGTGGCGTTTGCCGTGCTTTCCAAAGAGGTGAATGCACTCGGGGAGCTAGCTGCAAGTTTTCTCATGATGAGCAAGCATGCCTTATTCATATACACGCGGTTCTGCCATGGATGCGTCACCCTGTCGACATCACTCGCTGTCCAGAACTCCCCGTCTGTAGTGTTCCTTTGATGAAACGCAGGTTACAGTCGGTACTGGAGGAGAACATGGGAATTTCCAAGCTGTTCCCTGTTCAGGTCGCACTTTGGCAAGAAACGGTTGGACCGGGTGACTTTGAGCGAGACCTTTGCATAAACTCGCCCACCGGAAGTGGCAAAACCTTGGCCTATGCTCTTCCCATCGTTCAAAACTTGTTCACCAACCCCGGTGGCCGCCTCCGTGCTTTGGTTGTAGTTCCCACCCGCGACCTTGCTTTGCAGGTTAAGCGCGTCTTCGACGCCCTTGCATCGCCGCTGGGTCTCCGTATTGGCTTGGCTGCTGGTCAATCTTCGCTTCGCCACGAGCTTTCTAGCCTCATTTATCTACCTGGAGAAGACGATGGTCCAGATCCTGGGTTTTTGTCTCCGTTGTGGTTCCAAAGCAAGGTCGACATATTGGTAGCGACCCCTGGAAGGCTAGTGGACCATGTCAACAAGTTGTCATTGAAGCATCTTCGTTATCTCGTGGTTGACGAAGCAGATCGATTGCTACGTGAGGACTACCAGTCCTGGTTACCTACTGTGCTTAAATTAACTCAGTCTAGGCTGGCAAAGATAGTTTTATCTGCTACGTTAACTCGGGACCCAGGAAGACTTGCTCAACTTAATTTGCATCACCCTTTATTCCTGAGTGCTGGGAAAATGCGTTATCGGCTCCCAGAATATTTGGAATGTTACAAACTGATCTGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGAATCAACACATCATCTCTGCAAATTGCTAAATTGTTTTGGTGATCTGAAAATTGGTATCAAGGAGTTTTCTGGTCTAAAACATCAACGGGTAAGAAGCAAGACAGTGGGTGAATTTCGGAGAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACACAAAGACGTATGTTCATCGAGCTGGTAGAACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTCAAAAGATGAGGTTGGAGGATTTAAGAAGTTGATGAAAAAGGCTGAGGCTAGTGATTGTCTTGAGTATACTGTTCCATCCAGTTTGATTGAAGCGCTTCATAGTACCTACCAATCAGCACTGACAAAATTGAAGGAGAAAATTCTGGAGTCCCGGAGAAAACCAAGGATAAGTCTTGTCAATCGATCAAAGTGA >Glyma08g24875.2 sequence type=CDS gene model=Glyma08g24875 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCCGCCAACACTAGTGAAGCGCACTCAGAACATCAATGCCAGAGAAGCTGCACTCAGCATCGGCGACCATGCCTCCTGGCACACCAAGTACAAGGATTCCGCTTACATCTTCGTCGGTGGCATCCCCTTCGATCTCACCGAGGGTGACCTCCTCCCCGTTTTTGCTCAATACGGAGAGGTTGTTGATGTTAACCTAGTTAGGGACAAAGGTACCGGAAAATCCAAGGATTTTGCGTTCCTTGCGTATGAGGATCAGAGGAGCGCGGATCTTGCTGTGGATAATTTGAACGGGGCACAGGTTTTGGGGAGAATTATTAAGGTGGACCATGTTGATAAGTATAAGAAGAAGGAGGAGGAGGATGAAGAGACAGAGCGGCTGAAGAGGGAGGCACGTGGCGTTTGCCGTGCTTTCCAAAGAGGTGAATGCACTCGGGGAGCTAGCTGCAAGTTTTCTCATGATGAGCAAGCATGCCTTATTCATATACACGCGGTTCTGCCATGGATGCGTCACCCTGTCGACATCACTCGCTGTCCAGAACTCCCCGTCTGTAGTGTTCCTTTGATGAAACGCAGGTTACAGTCGGTACTGGAGGAGAACATGGGAATTTCCAAGCTGTTCCCTGTTCAGGTCGCACTTTGGCAAGAAACGGTTGGACCGGGTGACTTTGAGCGAGACCTTTGCATAAACTCGCCCACCGGAAGTGGCAAAACCTTGGCCTATGCTCTTCCCATCGTTCAAAACTTGTTCACCAACCCCGGTGGCCGCCTCCGTGCTTTGGTTGTAGTTCCCACCCGCGACCTTGCTTTGCAGGTTAAGCGCGTCTTCGACGCCCTTGCATCGCCGCTGGGTCTCCGTATTGGCTTGGCTGCTGGTCAATCTTCGCTTCGCCACGAGCTTTCTAGCCTCATTTATCTACCTGGAGAAGACGATGGTCCAGATCCTGGGTTTTTGTCTCCGTTGTGGTTCCAAAGCAAGGTCGACATATTGGTAGCGACCCCTGGAAGGCTAGTGGACCATGTCAACAAGTTGTCATTGAAGCATCTTCGTTATCTCGTGGTTGACGAAGCAGATCGATTGCTACGTGAGGACTACCAGTCCTGGTTACCTACTGTGCTTAAATTAACTCAGTCTAGGCTGGCAAAGATAGTTTTATCTGCTACGTTAACTCGGGACCCAGGAAGACTTGCTCAACTTAATTTGCATCACCCTTTATTCCTGAGTGCTGGGAAAATGCGTTATCGGCTCCCAGAATATTTGGAATGTTACAAACTGATCTGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGAATCAACACATCATCTCTGCAAATTGCTAAATTGTTTTGGTGATCTGAAAATTGGTATCAAGGAGTTTTCTGGTCTAAAACATCAACGGGTAAGAAGCAAGACAGTGGGTGAATTTCGGAGAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACACAAAGACGTATGTTCATCGAGCTGGTAGAACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTCAAAAGATGAGGTTGGAGGATTTAAGAAGTTGATGAAAAAGGCTGAGGCTAGTGATTGTCTTGAGTATACTGTTCCATCCAGTTTGATTGAAGCGCTTCATAGTACCTACCAATCAGCACTGACAAAATTGAAGGAGAAAATTCTGGAGTCCCGGAGAAAACCAAGGATAAGTCTTGTCAATCGATCAAAGTGA
>Glyma08g24875.1 sequence type=predicted peptide gene model=Glyma08g24875 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNPPTLVKRTQNINAREAALSIGDHASWHTKYKDSAYIFVGGIPFDLTEGDLLPVFAQYGEVVDVNLVRDKGTGKSKDFAFLAYEDQRSADLAVDNLNGAQVLGRIIKVDHVDKYKKKEEEDEETERLKREARGVCRAFQRGECTRGASCKFSHDEQACLIHIHAVLPWMRHPVDITRCPELPVCSVPLMKRRLQSVLEENMGISKLFPVQVALWQETVGPGDFERDLCINSPTGSGKTLAYALPIVQNLFTNPGGRLRALVVVPTRDLALQVKRVFDALASPLGLRIGLAAGQSSLRHELSSLIYLPGEDDGPDPGFLSPLWFQSKVDILVATPGRLVDHVNKLSLKHLRYLVVDEADRLLREDYQSWLPTVLKLTQSRLAKIVLSATLTRDPGRLAQLNLHHPLFLSAGKMRYRLPEYLECYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVESTHHLCKLLNCFGDLKIGIKEFSGLKHQRVRSKTVGEFRRGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYTKTYVHRAGRTARAGQTGRCFTLMSKDEVGGFKKLMKKAEASDCLEYTVPSSLIEALHSTYQSALTKLKEKILESRRKPRISLVNRSK* >Glyma08g24875.2 sequence type=predicted peptide gene model=Glyma08g24875 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNPPTLVKRTQNINAREAALSIGDHASWHTKYKDSAYIFVGGIPFDLTEGDLLPVFAQYGEVVDVNLVRDKGTGKSKDFAFLAYEDQRSADLAVDNLNGAQVLGRIIKVDHVDKYKKKEEEDEETERLKREARGVCRAFQRGECTRGASCKFSHDEQACLIHIHAVLPWMRHPVDITRCPELPVCSVPLMKRRLQSVLEENMGISKLFPVQVALWQETVGPGDFERDLCINSPTGSGKTLAYALPIVQNLFTNPGGRLRALVVVPTRDLALQVKRVFDALASPLGLRIGLAAGQSSLRHELSSLIYLPGEDDGPDPGFLSPLWFQSKVDILVATPGRLVDHVNKLSLKHLRYLVVDEADRLLREDYQSWLPTVLKLTQSRLAKIVLSATLTRDPGRLAQLNLHHPLFLSAGKMRYRLPEYLECYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVESTHHLCKLLNCFGDLKIGIKEFSGLKHQRVRSKTVGEFRRGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYTKTYVHRAGRTARAGQTGRCFTLMSKDEVGGFKKLMKKAEASDCLEYTVPSSLIEALHSTYQSALTKLKEKILESRRKPRISLVNRSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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