Report for Sequence Feature Glyma08g24830
Feature Type: gene_model
Chromosome: Gm08
Start: 18979061
stop: 18983133
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g24830
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G63010 AT
Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr5:25281739-25282967 FORWARD LENGTH=343
SoyBase E_val: 7.00E-119 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0080008 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
KOG0280
KOG
Uncharacterized conserved protein
JGI ISS
PTHR22850 Panther
WD40 REPEAT FAMILY
JGI ISS
PTHR22850:SF17 Panther
RETINOBLASTOMA-BINDING PROTEIN-RELATED
JGI ISS
PF00400 PFAM
WD domain, G-beta repeat
JGI ISS
UniRef100_G7KEH9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein n=2 Tax=Medicago truncatula RepID=G7KEH9_MEDTR
SoyBase E_val: 9.00E-179 ISS
UniRef100_UPI000233928E UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233928E related cluster n=1 Tax=unknown RepID=UPI000233928E
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g24830
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g24830
Paralog Evidence Comments
Glyma15g31310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g24830 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g230900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g24830
Coding sequences of Glyma08g24830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g24830.3 sequence type=CDS gene model=Glyma08g24830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTTTTAGTGAGGAAACTGCTGGGATTTTTGACATAAAATGGAGTCCAGCTGGAGGGCATGCAAGTCCTTTTCTAGCTCAAGCAGATGCTGATGGATACTTGAGGATTAAAATACTGGGGGGTTGCTGTAATGGAGTGGAAGGGGCTAATCTAAAGGAGATCACAAATGGAAAAATCAGTAACTCTATGTGCCTGTACCTGGATTGGAATCCTTCAGCTACATCCATCACAGTAGGGCTTTCTGACGGCTCTGTGTCGATTGTTTCTCTTCTTGAATCCAAGCTAGAAATACAAGATGAGTGGAAGGCACATGATTTTGAACTTTGGACAACCTCCTTTGACATCCACCAACCAAATTTGGTATACACCGGCTCTGATGATTGTAAATTCAGTTGCTGGGATTTGCGAGATAAACCTCCCAATGTGGTATTTCAGAGCTCTAAAGTCCACAAAATGGGTGTTTGTTGCATTGAGAAGAGTCCACATGACCCAAATACCTTGTTAACTGGCAGCTATGATGAATACCTAAGGGTATGGGATTTAAGATCAATGTCAAAACCCCTTAATAAGACTTCAATTAACTTGGGGGGAGGAGTTTGGAGGGTTAAGCACCACCCCTTCATTCCAGGTTTGGTTTTGGCTGCTTGTATGCACAATGGTTTTGCTATTGTCGCCATTAAAGGCAACAATGCTGAAGTGTCGGAAACTTACAAGAAGCATGATTCTCTTGCCTATGGAGCAGACTGGCAGAAACGAGAAGCAAATCACATAGGTGGGAATACCAAACCTCTAGTGGCTACTTGCTCATTCTATGACAAACTTGTTCGGGTGTGGAGGCCAGGAAATGATATTGTCTTGTAG
Predicted protein sequences of Glyma08g24830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g24830.3 sequence type=predicted peptide gene model=Glyma08g24830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVFSEETAGIFDIKWSPAGGHASPFLAQADADGYLRIKILGGCCNGVEGANLKEITNGKISNSMCLYLDWNPSATSITVGLSDGSVSIVSLLESKLEIQDEWKAHDFELWTTSFDIHQPNLVYTGSDDCKFSCWDLRDKPPNVVFQSSKVHKMGVCCIEKSPHDPNTLLTGSYDEYLRVWDLRSMSKPLNKTSINLGGGVWRVKHHPFIPGLVLAACMHNGFAIVAIKGNNAEVSETYKKHDSLAYGADWQKREANHIGGNTKPLVATCSFYDKLVRVWRPGNDIVL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
