SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G16780 | AT | Annotation by Michelle Graham. TAIR10: SART-1 family | chr5:5517784-5521566 REVERSE LENGTH=820 | SoyBase | E_val: 0 | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010305 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation | SoyBase | N/A | ISS |
| GO:0010588 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon vascular tissue pattern formation | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0048367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: shoot development | SoyBase | N/A | ISS |
| GO:0048528 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic root development | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2217 | KOG | U4/U6.U5 snRNP associated protein | JGI | ISS | |
| PTHR14152 | Panther | SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES | JGI | ISS | |
| PF03343 | PFAM | SART-1 family | JGI | ISS | |
| UniRef100_G7I9G8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: U4/U6.U5 tri-snRNP-associated protein n=1 Tax=Medicago truncatula RepID=G7I9G8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338DC7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338DC7 related cluster n=1 Tax=unknown RepID=UPI0002338DC7 | SoyBase | E_val: 0 | ISS |
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Glyma08g24663 not represented in the dataset |
Glyma08g24663 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g29952 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g229600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g24663.1 sequence type=CDS gene model=Glyma08g24663 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGTGGAGTGGTCTGATTCACGGTACGATGGTAGAAATGATAAGGAGGATTCCCCGGTGAGGGAGCAATATGACAATGATGGGGCGGAGAAATCTAGCAAGCATAGAGGCAAGGACAGGAAGAAGGAGCACCGTCGGGAACATCCAAAGGATGCTTCAAAAGAAGGAAGGGAACGGAAGAAGGAAGATAGGGACGAACGTGAGAAGGATCGTGGTAATGATAAGGCAAGGGAGAAGGATTATGATAGGGAGAAATATAGGGAGAAGGAGCGTGAGAGGGATAGGGATAAGAAGGACCGGAGTAAGGATAAAGAGCGTGAGAAGGAGAGAGAGGTGGAGAAAGACAGTGATAGAGTGCGGGAGAAAGAGAGGGGTAAAGAGAAGAGCAGAGATAGGGATAGGGAAAGGGAAAGGGAGAAAGAAAGGGATAAAGCAAAGGAAAGAGAGAGGGAGAAGTACAGAGATAGAGAGAAGGAGAGAGAAAGCTATAGAGATGGGGACAAGGATAAGGGGAAAGATAAAATTAGAGAGAAGGAGAGGGAGACGGATCGAGATAAAGAAAGGACGAGAGATAGAGTGAGCAGAAAGACTCATGAGGAAGATTATGAACTGGATAATGTTGATGATAAAGTAGACTACCAAGACAAGAGAGATGAGGAGATTGGCAAGCAGGAAAAGGATTCAAAGCTTGACAATGATAATCAAGATGGTCAAACATCAGCACATCTGTCATCAACAGAACTTGAAGACCGCATCTTGAAGATGAAAGAATCAAGGACAAAGAAGCAGCCTGAAGCTGATTCTGAGATCTCAGCATGGGTTAATAAAAGCCGCAAGATAGAAAAGAAAAGAGCATTTCAGCTCTCAAAGATTTTTGAGGAGCAGGACAACATTGCAGTAGAGGGAAGTGATGATGAGGATACAGCCCAACACACTGATAATTTGGCGGGGGTGAAAGTTCTTCATGGCCTCGATAAAGTTATGGAAGGCGGAACAGTAGTTCTAACTATTAAAGATCAGCCCATACTTGCTGATGGTGATGTTAATGAAGATGTTGACATGCTTGAGAACATTGAAATTGGAGAACAGAAACGACGAGATGAGGCTTATAAAGCTGCAAAAAAGAAAACTGGCGTATATGATGATAAGTTCCATGATGACCCCTCCACGGAGAAGAAAATGCTTCCACAGTATGATGATCCAGCTGCAGAAGAGGGTTTAACTTTGGATGGAAAGGGACGATTCTCAGGTGAAGCTGAGAAGAAACTTGAAGAGCTGCGAAGAAGGTTAACGGGTGTTTCCACGAATACCTTTGAAGATCTAACTTCATCTGGAAAGGTATCATCTGATTACTATACTCATGAAGAAATGCTAAAATTTAAGAAGCCCAAGAAGAAAAAATCTTTGCGGAAGAAAGATAAGCTGGACATCAATGCCCTTGAAGCTGAAGCTGTCTCTTCTGGATTGGGGGTTGGTGACCTTGGTTCTCGGAAAGATGTAAGGAGGCAAGCCATCAAAGATGAGCAAGAAAGGTTGGAGGCTGAGATGAGAAGTAATGCTTACCAGTCTGCTTATGCTAAAGCAGACGAAGCCTCCAAATTGCTGCGTCTGGAACAAACTCTCAATGTTAAAACAGAGGAAGATGAAACTCCAGTTTTTGTAGATGATGATGAGGATCTTCGTAAGTCCTTAGAGAAAGCGAGAAGATTAGCTCTTAAAAAGAAGGAGGGGGAAGGGGCATCTGGTCCTCAAGCTATTGCGTTGCTTGCCACCTCTAATCATAATAATGAGACTGATGATCAAAACCCTACAGCTGGAGAGTCACGAGAAAACAAGGTGGTCTTCACAGAGATGGAAGAATTTGTCTGGGGTCTCCACATTGATGAAGAAGCACGTAAACCAGAAAGTGAAGATGTTTTCATGCATGATGATGAAGAGGCTAATGTTCCTGATGAAGAAAAGATTAATGAGGTTGGTGGATGGACTGAAGTTCAAGAAACTAGTGAAGATGAACAACGCAATACAGAAGACAAAGAAGAAATAATTCCTGATGAAACTATCCATGAAGTTGCTGTAGGGAAAGGATTGTCAGGTGCTTTGAAACTGCTTAAAGAGCGAGGAACACTTAAAGAAAGCATTGAATGGGGTGGCAGAAACATGGACAAGAAGAAAAGTAAATTGGTTGGGATCGTAGATGATGAAGAGAAGGAAGCACAGAAGACAAGGGAAATTCGCATTGAAAGGACAGATGAATTTGGGAGAATTTTGACTCCTAAGGAAGCCTTTCGGATGATCTCTCATAAGTTCCATGGTAAAGGACCTGGAAAAATGAAGCAAGAAAAGCGTATGAAGCAATATTACGAAGAATTGAAGATGAAGCAAATGAAGAGCTCAGATACACCATCACTGTCTGTGGAGAGAATGAGGGAAGCTCAAGCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGGACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGATACCCCAAAAAAGCCTAAATCATAA
>Glyma08g24663.1 sequence type=predicted peptide gene model=Glyma08g24663 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVEWSDSRYDGRNDKEDSPVREQYDNDGAEKSSKHRGKDRKKEHRREHPKDASKEGRERKKEDRDEREKDRGNDKAREKDYDREKYREKERERDRDKKDRSKDKEREKEREVEKDSDRVREKERGKEKSRDRDREREREKERDKAKEREREKYRDREKERESYRDGDKDKGKDKIREKERETDRDKERTRDRVSRKTHEEDYELDNVDDKVDYQDKRDEEIGKQEKDSKLDNDNQDGQTSAHLSSTELEDRILKMKESRTKKQPEADSEISAWVNKSRKIEKKRAFQLSKIFEEQDNIAVEGSDDEDTAQHTDNLAGVKVLHGLDKVMEGGTVVLTIKDQPILADGDVNEDVDMLENIEIGEQKRRDEAYKAAKKKTGVYDDKFHDDPSTEKKMLPQYDDPAAEEGLTLDGKGRFSGEAEKKLEELRRRLTGVSTNTFEDLTSSGKVSSDYYTHEEMLKFKKPKKKKSLRKKDKLDINALEAEAVSSGLGVGDLGSRKDVRRQAIKDEQERLEAEMRSNAYQSAYAKADEASKLLRLEQTLNVKTEEDETPVFVDDDEDLRKSLEKARRLALKKKEGEGASGPQAIALLATSNHNNETDDQNPTAGESRENKVVFTEMEEFVWGLHIDEEARKPESEDVFMHDDEEANVPDEEKINEVGGWTEVQETSEDEQRNTEDKEEIIPDETIHEVAVGKGLSGALKLLKERGTLKESIEWGGRNMDKKKSKLVGIVDDEEKEAQKTREIRIERTDEFGRILTPKEAFRMISHKFHGKGPGKMKQEKRMKQYYEELKMKQMKSSDTPSLSVERMREAQARLQTPYLVLSGHVKPGQTSDPKSGFATVEKDLPGGLTPMLGDRKVEHFLGIKRKAEPSSSDTPKKPKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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