SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04920 | AT | Annotation by Michelle Graham. TAIR10: EAP30/Vps36 family protein | chr5:1439172-1441545 REVERSE LENGTH=440 | SoyBase | E_val: 0 | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0000814 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ESCRT II complex | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG2760 | KOG | Vacuolar sorting protein VPS36 | JGI | ISS | |
| PTHR13128 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR13128:SF5 | Panther | gb def: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUG13 (Hypothetical pro | JGI | ISS | |
| PF04157 | PFAM | EAP30/Vps36 family | JGI | ISS | |
| PF11605 | PFAM | Vacuolar protein sorting protein 36 Vps36 | JGI | ISS | |
| UniRef100_G7L707 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting protein n=1 Tax=Medicago truncatula RepID=G7L707_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KVX9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVX9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g24460 not represented in the dataset |
Glyma08g24460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g34653 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g228000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g24460.2 sequence type=transcript gene model=Glyma08g24460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTGTTTTAAGGGACATCTATTCTCCCACTAGAAGAAGTCTAGAACTATAGCTGCCACTTTCAGAACGACGTCGAACCTCGCTTTTCGCCGATGGCCGGAAACTGCTTGCCGCCGGTGAAGCTCACCGGCAGCGGCCGCCCGGTGCTCGAACCCAACGAAATCGAGTGCTTCTTCCTCTCCGGCGTTGACCTTCTCAGCGAAGACGACCCCAGCTTCCCTCACCTCAAATCTGGCCTCCTCATCCTCACCACGCACCGCCTACTCTGGCTCCCGGACTCCGCCGCATCCGCCGGCGGCACCGCCGGCGCCATCCCCCTCGCCGCCGTCTCCCACATTTTCTCCCCCAAGATGTCCCTGCGGAAGGTGTTCGCCTCGCCGCGGGTCCGGTTCCAGGTGTCACTGTCGCCGGAGGGAAGGGTCTCCGCGGCGGGTTCGCGATCGGTGGTGGCGACGGCGGTGGTGAGAGGGAAGGGGGATTGCGACGCGTTTTTGGCGAAGTTTACGGAGAATTGCCGCGCCAGGGCGTGGCAGGAGGCGGAGAGTGGGTCCAGTTCGGGGTCGAATTCGGCAGTGATGGCGGCAACAGCGACATCATCATCGTCGGGCGGGATTTATTCGAGCGACGGAACGGTGAGGATGGTGGGAGTGTCTGGGATACTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAGGAGCTTGCAGGAGGCTTTTCAGGATTTGAATGCTCTCATGAGCAAGGCTAAAGAGATGGTGATGCTAGCAGAGAAAATGAGGCTAAAACTTTTGTCTGGCTCAAATTCTCAAACCAATGCAACTAATGATGAGGAGATGGGTTCGAAGGAAGAAATGCAAGATTGGTTATTGAGTGTTGGTATTATATCCCCTGTTACGAAAGAGTCTGCGGGTGCTTTGTATCATCAACAACTTTCTCGTCAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAAAGCTGGGGGAATTATCAATCTTATTGATATATATTGTCTCTTCAACCGTGCTCGTGGCACAGAATTGATCTCACCTGATGATTTGTTGCAAGCATGTTCTCTGTGGGAGAAGTTTGATGTCCAAGTGGTTCTGCGCAAGTTTGATAGTGGAGTCATGGTAATACAGACGAAGTCCCACAGTGATGAGGAGGTTTTCAATAAAGTCAAGATGCTTGTTTTGAAACCTGACGCCCTTCGAGCTGGAATAAGTGCTAGTGATGCTGCAAGGACACTAGGGGTTGCTCCAGCAATGGCAAAGGAGCATCTCTTGTCTGCAGAGAGCAAAGGTTTACTATGCAGAGATATCAGCCCTGATGGATTTCGCTTTTATATTAACTTGTTTGTGGAAATTGACCGAGATTATATGTATTTAGTGAAAGATCAGGGAATTTATGCCTCGTGGGTACAGGCTAACGATACTCATGCTTGAGAGTCCCAAGCATGTTTAATTCAAGGTATGCATAAATTTTAAATTGATAAAGCGATGATAAGCAGGAAGGGAAAAATGTACACACACACGCATACAGTTTTACTGTGCTTCAATCAATGTGAGATTTTCATTGTAGAGGACACTTCACATAATCATTCTGTAGAAGGATTATAAATACTTGAAAAGACTCGAAGCAAAACTTATATGTATCATGTCATATCATTCCAAAAGCTATTGTTACTCTTAGCCTAGCTTTCCATACATGATGTATGATGATGTTGAGGATTACTCTGATATCCATCCCCCTTTTTTATTATGATACCAATACTCAACGTGAGTTCTTAATTATTTGTTATTTGTTAATTA
>Glyma08g24460.1 sequence type=CDS gene model=Glyma08g24460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGGAAACTGCTTGCCGCCGGTGAAGCTCACCGGCAGCGGCCGCCCGGTGCTCGAACCCAACGAAATCGAGTGCTTCTTCCTCTCCGGCGTTGACCTTCTCAGCGAAGACGACCCCAGCTTCCCTCACCTCAAATCTGGCCTCCTCATCCTCACCACGCACCGCCTACTCTGGCTCCCGGACTCCGCCGCATCCGCCGGCGGCACCGCCGGCGCCATCCCCCTCGCCGCCGTCTCCCACATTTTCTCCCCCAAGATGTCCCTGCGGAAGGTGTTCGCCTCGCCGCGGGTCCGGTTCCAGGTGTCACTGTCGCCGGAGGGAAGGGTCTCCGCGGCGGGTTCGCGATCGGTGGTGGCGACGGCGGTGGTGAGAGGGAAGGGGGATTGCGACGCGTTTTTGGCGAAGTTTACGGAGAATTGCCGCGCCAGGGCGTGGCAGGAGGCGGAGAGTGGGTCCAGTTCGGGGTCGAATTCGGCAGTGATGGCGGCAACAGCGACATCATCATCGTCGGGCGGGATTTATTCGAGCGACGGAACGGTGAGGATGGTGGGAGTGTCTGGGATACTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAGGAGCTTGCAGGAGGCTTTTCAGGATTTGAATGCTCTCATGAGCAAGGCTAAAGAGATGGTGATGCTAGCAGAGAAAATGAGGCTAAAACTTTTGTCTGGCTCAAATTCTCAAACCAATGCAACTAATGATGAGGAGATGGGTTCGAAGGAAGAAATGCAAGATTGGTTATTGAGTGTTGGTATTATATCCCCTGTTACGAAAGAGTCTGCGGGTGCTTTGTATCATCAACAACTTTCTCGTCAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAAAGCTGGGGGAATTATCAATCTTATTGATATATATTGTCTCTTCAACCGTGCTCGTGGCACAGAATTGATCTCACCTGATGATTTGTTGCAAGCATGTTCTCTGTGGGAGAAGTTTGATGTCCAAGTGGTTCTGCGCAAGTTTGATAGTGGAGTCATGGTAATACAGACGAAGTCCCACAGTGATGAGGAGGTTTTCAATAAAGTCAAGATGCTTGTTTTGAAACCTGACGCCCTTCGAGCTGGAATAAGTGCTAGTGATGCTGCAAGGACACTAGGGGTTGCTCCAGCAATGGCAAAGGAGCATCTCTTGTCTGCAGAGAGCAAAGGTTTACTATGCAGAGATATCAGCCCTGATGGATTTCGCTTTTATATTAACTTGTTTGTGGAAATTGACCGAGATTATATGTATTTTGTTATTTTGCCATTTATGCAGAGTGAAAGATCAGGGAATTTATGCCTCGTGGGTACAGGCTAA >Glyma08g24460.2 sequence type=CDS gene model=Glyma08g24460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGGAAACTGCTTGCCGCCGGTGAAGCTCACCGGCAGCGGCCGCCCGGTGCTCGAACCCAACGAAATCGAGTGCTTCTTCCTCTCCGGCGTTGACCTTCTCAGCGAAGACGACCCCAGCTTCCCTCACCTCAAATCTGGCCTCCTCATCCTCACCACGCACCGCCTACTCTGGCTCCCGGACTCCGCCGCATCCGCCGGCGGCACCGCCGGCGCCATCCCCCTCGCCGCCGTCTCCCACATTTTCTCCCCCAAGATGTCCCTGCGGAAGGTGTTCGCCTCGCCGCGGGTCCGGTTCCAGGTGTCACTGTCGCCGGAGGGAAGGGTCTCCGCGGCGGGTTCGCGATCGGTGGTGGCGACGGCGGTGGTGAGAGGGAAGGGGGATTGCGACGCGTTTTTGGCGAAGTTTACGGAGAATTGCCGCGCCAGGGCGTGGCAGGAGGCGGAGAGTGGGTCCAGTTCGGGGTCGAATTCGGCAGTGATGGCGGCAACAGCGACATCATCATCGTCGGGCGGGATTTATTCGAGCGACGGAACGGTGAGGATGGTGGGAGTGTCTGGGATACTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAGGAGCTTGCAGGAGGCTTTTCAGGATTTGAATGCTCTCATGAGCAAGGCTAAAGAGATGGTGATGCTAGCAGAGAAAATGAGGCTAAAACTTTTGTCTGGCTCAAATTCTCAAACCAATGCAACTAATGATGAGGAGATGGGTTCGAAGGAAGAAATGCAAGATTGGTTATTGAGTGTTGGTATTATATCCCCTGTTACGAAAGAGTCTGCGGGTGCTTTGTATCATCAACAACTTTCTCGTCAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAAAGCTGGGGGAATTATCAATCTTATTGATATATATTGTCTCTTCAACCGTGCTCGTGGCACAGAATTGATCTCACCTGATGATTTGTTGCAAGCATGTTCTCTGTGGGAGAAGTTTGATGTCCAAGTGGTTCTGCGCAAGTTTGATAGTGGAGTCATGGTAATACAGACGAAGTCCCACAGTGATGAGGAGGTTTTCAATAAAGTCAAGATGCTTGTTTTGAAACCTGACGCCCTTCGAGCTGGAATAAGTGCTAGTGATGCTGCAAGGACACTAGGGGTTGCTCCAGCAATGGCAAAGGAGCATCTCTTGTCTGCAGAGAGCAAAGGTTTACTATGCAGAGATATCAGCCCTGATGGATTTCGCTTTTATATTAACTTGTTTGTGGAAATTGACCGAGATTATATGTATTTAGTGAAAGATCAGGGAATTTATGCCTCGTGGGTACAGGCTAACGATACTCATGCTTGA
>Glyma08g24460.1 sequence type=predicted peptide gene model=Glyma08g24460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGNCLPPVKLTGSGRPVLEPNEIECFFLSGVDLLSEDDPSFPHLKSGLLILTTHRLLWLPDSAASAGGTAGAIPLAAVSHIFSPKMSLRKVFASPRVRFQVSLSPEGRVSAAGSRSVVATAVVRGKGDCDAFLAKFTENCRARAWQEAESGSSSGSNSAVMAATATSSSSGGIYSSDGTVRMVGVSGILRKEQEMWESTDRSLQEAFQDLNALMSKAKEMVMLAEKMRLKLLSGSNSQTNATNDEEMGSKEEMQDWLLSVGIISPVTKESAGALYHQQLSRQLADFVKVPLEKAGGIINLIDIYCLFNRARGTELISPDDLLQACSLWEKFDVQVVLRKFDSGVMVIQTKSHSDEEVFNKVKMLVLKPDALRAGISASDAARTLGVAPAMAKEHLLSAESKGLLCRDISPDGFRFYINLFVEIDRDYMYFVILPFMQSERSGNLCLVGTG* >Glyma08g24460.2 sequence type=predicted peptide gene model=Glyma08g24460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGNCLPPVKLTGSGRPVLEPNEIECFFLSGVDLLSEDDPSFPHLKSGLLILTTHRLLWLPDSAASAGGTAGAIPLAAVSHIFSPKMSLRKVFASPRVRFQVSLSPEGRVSAAGSRSVVATAVVRGKGDCDAFLAKFTENCRARAWQEAESGSSSGSNSAVMAATATSSSSGGIYSSDGTVRMVGVSGILRKEQEMWESTDRSLQEAFQDLNALMSKAKEMVMLAEKMRLKLLSGSNSQTNATNDEEMGSKEEMQDWLLSVGIISPVTKESAGALYHQQLSRQLADFVKVPLEKAGGIINLIDIYCLFNRARGTELISPDDLLQACSLWEKFDVQVVLRKFDSGVMVIQTKSHSDEEVFNKVKMLVLKPDALRAGISASDAARTLGVAPAMAKEHLLSAESKGLLCRDISPDGFRFYINLFVEIDRDYMYLVKDQGIYASWVQANDTHA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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