Glyma08g24410 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g24410

Feature Type:	gene_model
Chromosome:	Gm08
Start:	18600135
stop:	18602739
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g24410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59500	AT	Annotation by Michelle Graham. TAIR10: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases \| chr5:23986024-23987214 FORWARD LENGTH=396	SoyBase	E_val: 2.00E-170	ISS
GO:0006481	GO-bp	Annotation by Michelle Graham. GO Biological Process: C-terminal protein methylation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004671	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	SoyBase	N/A	ISS
KOG2628	KOG	Farnesyl cysteine-carboxyl methyltransferase	JGI		ISS
PF04140	PFAM	Isoprenylcysteine carboxyl methyltransferase (ICMT) family	JGI		ISS
UniRef100_I1KVX6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVX6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LTI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C-terminal S-isoprenylcysteine carboxyl O-methyltransferase n=2 Tax=Arabidopsis thaliana RepID=Q9LTI0_ARATH	SoyBase	E_val: 9.00E-168	ISS

Expression Patterns of Glyma08g24410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g24410

Paralog	Evidence	Comments
Glyma15g34791	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g24410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g227600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g24410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g24410

Limit To All Plant Sequences

>Glyma08g24410.1   sequence type=CDS   gene model=Glyma08g24410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGCAAAGGTTCTTTCACACTGCAAAACTGCCCCTTTTGGTTTCTCTATCGTGAGCAACAAAGTGTCTCTAAGACCTTTCAACAAACATTTTCATGCTGATGTACTTGCTAACAGACCCAAGAACATTAGTTTTCAATTGAATTGCACCTTTGGAAACCCTTCTTCCTCAGTATCAAAACCAGCAAGAAAAAGGGCTGATTTGTTACATTTTCCCAGATGCTCAATTTCCAGTAATGCCAGCACTGAATCTCAAAATTCAGTCATAGATTTCTTCAGAAATCTATCATTTGATTCAATAAAAGCTACTCTCCTGCAGTTGACTCCAATTGATGTTGTAAAGTGGTCTGGGATATTATGCATCATAACCGCAGCCACAAAATGGACTAAGAATATGCTTTTCAGTCCCTTCTTTTGGATGTATTTTAGCTGGACCTGGTTGTTCTGGCCTTGGATGGTGGCCGTAGTGCTTGCAGTCTATGGGTTATATTGCTTTCGGAAACATCTGCATGGTGAGGCAAACATATTTGAGCAATTGGCAATTGTTACATCAGTTTTTACGTGGCTCACTCTTGTTCCACCTGGTCATTTCAATGGCTACCTTGAAGGCTGGCCTTATGTTTTCTTTTTTGTGTATCATTATTTCTTTTTCTTCAATGTCAGTGTTAGAAAGCGGTTATATGGAGATTATTTTGCTAGGCCCCATGACCCAAAGTGGGATGTGAACTTGCCGACATGGTCTCGCCTATTGTTCAGCACAGGAGTCATGGTTGGCCATTGGCTTGCAGCATTTGAAGGGCCTGAGCTTCACCTCATACCGGGTGGGTGGAGCAATCTTGGAATCTGGGCTTTAATCATTACAACTCTGCTAATGCAGTATAACGCAACATTGTATCTCGCCAAGTATTCAGAAAATGTGGTGGAGCCAACTGCTGTTGTGCAATTTGGACCTTATCGTTGGGTCCGTCATCCAATATATTCATCAACCATGCTTTTGTTTGTAACATACTGCATTGCACTTCGAGCACCTCTGAGTCTGCTATTTATTCTAGCAGTATGCTTGTTGTATTATAAGCAGAAGGCAGAGAGGGAAGAGGATTTGATGGTTGAGACTTTTGGCCAGAGTTACACAGAATATGCAAGCAAAGTTAAGTACAAGCTTATTCCTTTTATCTATTAG

Predicted protein sequences of Glyma08g24410

Limit To All Plant Sequences

>Glyma08g24410.1   sequence type=predicted peptide   gene model=Glyma08g24410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAAKVLSHCKTAPFGFSIVSNKVSLRPFNKHFHADVLANRPKNISFQLNCTFGNPSSSVSKPARKRADLLHFPRCSISSNASTESQNSVIDFFRNLSFDSIKATLLQLTPIDVVKWSGILCIITAATKWTKNMLFSPFFWMYFSWTWLFWPWMVAVVLAVYGLYCFRKHLHGEANIFEQLAIVTSVFTWLTLVPPGHFNGYLEGWPYVFFFVYHYFFFFNVSVRKRLYGDYFARPHDPKWDVNLPTWSRLLFSTGVMVGHWLAAFEGPELHLIPGGWSNLGIWALIITTLLMQYNATLYLAKYSENVVEPTAVVQFGPYRWVRHPIYSSTMLLFVTYCIALRAPLSLLFILAVCLLYYKQKAEREEDLMVETFGQSYTEYASKVKYKLIPFIY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain