Glyma08g24320 - SoyBase

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Report for Sequence Feature Glyma08g24320

Feature Type:	gene_model
Chromosome:	Gm08
Start:	18508831
stop:	18509842
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g24320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61750	AT	Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein \| chr5:24812804-24813436 REVERSE LENGTH=210	SoyBase	E_val: 2.00E-64	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0030145	GO-mf	Annotation by Michelle Graham. GO Molecular Function: manganese ion binding	SoyBase	N/A	ISS
GO:0045735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity	SoyBase	N/A	ISS
PF00190	PFAM	Cupin	JGI		ISS
UniRef100_C6T1Q5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Germin-like protein 7 n=1 Tax=Glycine max RepID=C6T1Q5_SOYBN	SoyBase	E_val: 2.00E-150	ISS
UniRef100_C6T1Q5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Germin-like protein 7 n=1 Tax=Glycine max RepID=C6T1Q5_SOYBN	SoyBase	E_val: 2.00E-150	ISS

Expression Patterns of Glyma08g24320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g24320

Paralog	Evidence	Comments
Glyma15g35130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g24320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g226800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g24320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g24320

Limit To All Plant Sequences

>Glyma08g24320.1   sequence type=CDS   gene model=Glyma08g24320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACCCTTTGCTCCCTTTTTCTTTATGTTGTTGTTCTTGGAGGCTTTTTCCAACATCCAAGTTTGCTTGGGAGATTGTGATAATCTTCAGGACACTTGTCCAGCAGTTCCACCCAATAAGCAGACCATATTCATCAATGGTCTTCAATGCAAAAACCCAGTTAATGTAACAGCTCAAGATTTCAGGACCACAGAACTAAGCAAAGCTGGCCCTACAGACATTTTTGGTGCATCTTTGAAAATTGTGAGTGCTGCTGAGTTCAATGGTCTGAATACTCTTGGCCTCTCCATTGGAAGAATTGACCTTGATGGGAATGGCCTGGTGAACTTCCACTATCATCCTAGGGCTACTGAAATAATCTTTGTTACCAAAGGTGTGTTGTTGGCAGGTTTTGTTGACACCAAAAACCAGTTTTTCCAGAAGTTTCTTAAAGTTGGTGATGTCTTTGTGTTCCCCAAGGCTTTGTTCCACTTCTGTCTAAATACTGGTTTTGAAGAATCCACTGTTTTCTCAGTGTACAACAGCCAGAATCCTGGCTTTGTGTCCCTAAGTCCTACAACTTTTGACACAACATTGGAATCATTGGACAAGATCAAGAAGAGACTCATGTCACTCTCTGCCTCTGAAGCTTAA

Predicted protein sequences of Glyma08g24320

Limit To All Plant Sequences

>Glyma08g24320.1   sequence type=predicted peptide   gene model=Glyma08g24320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPFAPFFFMLLFLEAFSNIQVCLGDCDNLQDTCPAVPPNKQTIFINGLQCKNPVNVTAQDFRTTELSKAGPTDIFGASLKIVSAAEFNGLNTLGLSIGRIDLDGNGLVNFHYHPRATEIIFVTKGVLLAGFVDTKNQFFQKFLKVGDVFVFPKALFHFCLNTGFEESTVFSVYNSQNPGFVSLSPTTFDTTLESLDKIKKRLMSLSASEA*

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