|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G52920 | AT | Annotation by Michelle Graham. TAIR10: plastidic pyruvate kinase beta subunit 1 | chr5:21463680-21466612 FORWARD LENGTH=579 | SoyBase | E_val: 4.00E-99 | ISS |
GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
GO:0010431 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed maturation | SoyBase | N/A | ISS |
GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
GO:0004743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyruvate kinase activity | SoyBase | N/A | ISS |
GO:0030955 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: potassium ion binding | SoyBase | N/A | ISS |
PTHR11817 | Panther | PYRUVATE KINASE | JGI | ISS | |
PF00224 | PFAM | Pyruvate kinase, barrel domain | JGI | ISS | |
UniRef100_I1KVW5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Pyruvate kinase (Fragment) n=1 Tax=Glycine max RepID=I1KVW5_SOYBN | SoyBase | E_val: 4.00E-118 | ISS |
UniRef100_I1KVW5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate kinase (Fragment) n=1 Tax=Glycine max RepID=I1KVW5_SOYBN | SoyBase | E_val: 4.00E-118 | ISS |
Glyma08g24265 not represented in the dataset |
Glyma08g24265 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.08g226500 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g24265.1 sequence type=CDS gene model=Glyma08g24265 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTATGGTTGTTAAGTCTACGACAAAGGATTCTGTGAAATGTGCAGTTGTTGATGGAGGAGAGCTCAAGTCAAGGATGCCAAAAGTTGTTCATGAACTGAAAAATTATTTGAAAAGTTGTGGTGTTGATATACATGTCATCATAAAAATTGAAAGTGCAAACTCTATACCAAATTTGCATTCAATTATCAGTGCATCTCATGGGACTATGGTTGCCAGAGGGGATCTTGGCGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGGAAGAGATAATCAACCTATGTTGTAACATGGGAAAAGTTGTTATTGTGGCAACATATATGCTAGAAAGCATGATTGTTCACCCAACTCCAACTAGAGCAGAGGTATCAGATATAACAATTGTTGTTCGAGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAACTCATGGAAAGTTCCCACTAAAAGCTATGCAAGTAATGCACACTGTAACATTGCGAACAGAAGCCACTATACCAGGTGGTAAAATGCCACCTAACATTGGTCAAGTGTTGAAGAACCACATGAGTGAGATGTTTACATACACCATGCAACCATGA
>Glyma08g24265.1 sequence type=predicted peptide gene model=Glyma08g24265 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMVVKSTTKDSVKCAVVDGGELKSRMPKVVHELKNYLKSCGVDIHVIIKIESANSIPNLHSIISASHGTMVARGDLGAELPIEEVPLLQEEIINLCCNMGKVVIVATYMLESMIVHPTPTRAEVSDITIVVREGSDGIMLSGETTHGKFPLKAMQVMHTVTLRTEATIPGGKMPPNIGQVLKNHMSEMFTYTMQP*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||