SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G13050 | AT | Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr3:4176866-4178868 FORWARD LENGTH=500 | SoyBase | E_val: 0 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:2001142 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nicotinate transport | SoyBase | N/A | ISS |
| GO:2001143 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-methylnicotinate transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005351 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity | SoyBase | N/A | ISS |
| GO:0015144 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0022857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0090416 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nicotinate transporter activity | SoyBase | N/A | ISS |
| GO:0090417 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: N-methylnicotinate transporter activity | SoyBase | N/A | ISS |
| KOG0253 | KOG | Synaptic vesicle transporter SV2 (major facilitator superfamily) | JGI | ISS | |
| PTHR24064 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24064:SF33 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00083 | PFAM | Sugar (and other) transporter | JGI | ISS | |
| UniRef100_I1KVW4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KVW4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q25AI7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: H0702G05.6 protein n=1 Tax=Oryza sativa RepID=Q25AI7_ORYSA | SoyBase | E_val: 0 | ISS |
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Glyma08g24250 not represented in the dataset |
Glyma08g24250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g00270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g226400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g24250.1 sequence type=CDS gene model=Glyma08g24250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGGGGGCTGAAGGCCCAACCTACACAGTAGATGATGCTCTTGTGGCTTTGGGTTTTGGAAATTTCCAAATTCTCGTGCTTGCTTATGCTGGTGTAGGTTGGGTTTCAGAAGCAATGGAAATGATGCTACTCTCTTTTGTAGGCCCTGCAGTTCAAACTGCATGGAATCTTTCCGCTCATGAAGAGAGTTTGATAACCAGTGTGGTTTTTGCTGGCATGCTAATTGGTGCATACTCATGGGGCATTGTTTCAGATAAACATGGAAGGAGGAAAGGATTCCTTATCACAGCGACAGTTACTGCTTTGGCTGGTTTTCTTAGTGCATTTGCTCCTAACTATATATTTTTAATTGTCCTCCGTTCTCTGGTTGGGATTGGTTTGGGAGGTGGCCCTGTATTATCATCTTGGTTTCTAGAGTTTGTTCCTGCTCCCAATAGAGGTACCTGGATGGTTGTCTTTTCAGCATTTTGGACTCTTGGTACAATTTTTGAGGCCTCACTTGCATGGATTGTGATGCCAAAACTGGGTTGGAGATGGCTTCTTGCACTGTCTTCTCTTCCCACGTCTTTCCTTCTTCTGTTCTACAAAGTGACTCCTGAGTCACCAAGATACCTATGTTTGAAAGGTAGAACAGCTGATGCAATTAATGTTTTGGAGAAAATAGCAAGAGTAAATGGAAGAGAACTTCCTTCCGGTATCCTTGTTTCTGAGCATGAAATTGAGTTACACAAAATTGATAACCCTACAGAGGACGCACGCTTGCTCTCACCAAGAACAAATGAAGATGAACATCCTAAAGGAATAGTTTCCAATTTAGGTGCTATCTCATCGTTGTTAGTGCTTCTCTCACCGAAATTGGCAAGGTCAACCCTTCTATTATGGGCTGTGTTCTTTGGCAATGCTTTTTCGTATTATGGCCTTGTTTTGTTGACCACTGAGTTAAACGGACATAGTAAATGCATGTCAGATAAATTGCAGACAGAGAAGTCCCAGGATGTTAGATACAAGAGTGTTTTTATTGCTAGTTTTGCAGAGCTACCAGGGCTTCTCTTGTCAGCTGCAGCAGTAGATAAACTCGGTCGTAAACTCTCAATGTCAATCATGTTCTTCATGTGCTGTATTTTCCTTCTCCCATTATTATTCTATCTGCCTGAAGGCCTAACAACGAGCTTTTTATTTCTAGCTCGCATATGCATCACAGCAACCTTCACAATTGTGTATATATATGCACCCGAGATGTACCCAACATCAGTTAGAACAACTGGTGTGGGAATTGCAAGTTCGGTGGGCAGAATTGGTGGAATGATATGTCCTTTGGTAGCTGTGGGTTTAGTACATGGATGTCATCAAACTGCAGCTGTCCTTCTGTTTGAGATCGTATCTCTTGTTTCAGGAATATGTGTCATGTTCTTCCCAATTGAAACCATGGGCCAGGAACTGCGAAATAATGTGCAAGTCTAA
>Glyma08g24250.1 sequence type=predicted peptide gene model=Glyma08g24250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTGAEGPTYTVDDALVALGFGNFQILVLAYAGVGWVSEAMEMMLLSFVGPAVQTAWNLSAHEESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFLITATVTALAGFLSAFAPNYIFLIVLRSLVGIGLGGGPVLSSWFLEFVPAPNRGTWMVVFSAFWTLGTIFEASLAWIVMPKLGWRWLLALSSLPTSFLLLFYKVTPESPRYLCLKGRTADAINVLEKIARVNGRELPSGILVSEHEIELHKIDNPTEDARLLSPRTNEDEHPKGIVSNLGAISSLLVLLSPKLARSTLLLWAVFFGNAFSYYGLVLLTTELNGHSKCMSDKLQTEKSQDVRYKSVFIASFAELPGLLLSAAAVDKLGRKLSMSIMFFMCCIFLLPLLFYLPEGLTTSFLFLARICITATFTIVYIYAPEMYPTSVRTTGVGIASSVGRIGGMICPLVAVGLVHGCHQTAAVLLFEIVSLVSGICVMFFPIETMGQELRNNVQV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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