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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma08g24221

Feature Type:gene_model
Chromosome:Gm08
Start:18420180
stop:18422053
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g24221
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
UniRef100_Q1SKZ9UniRef Annotation by Michelle Graham. Best UniRef hit: Zinc finger, CCHC-type n=1 Tax=Medicago truncatula RepID=Q1SKZ9_MEDTR SoyBaseE_val: 2.00E-15ISS
UniRef100_Q1SKZ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger, CCHC-type n=1 Tax=Medicago truncatula RepID=Q1SKZ9_MEDTR SoyBaseE_val: 2.00E-15ISS

Expression Patterns of Glyma08g24221
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g24221 not represented in the dataset
Glyma08g24221 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g24221 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g24221
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g24221
>Glyma08g24221.1   sequence type=CDS   gene model=Glyma08g24221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTCCTGCACCGAAGGGAGACTCCTCATCTACGCCGCCGCCTAAACCACCAAATAGACTACCAAATGCGAATTTTATGAAGCCTTCCTTCAAGGAAAAAGTGGTGGGACAACCGTTGGAACCCAATGTGGTCCACAATCTTGTAGAAGAGACTTTTCTAAGACTGGAATTAAAGGAAGGTAACTTTCTCTTGTTGAAATTCACTGTTGAAGCTAGCAAGTTCGAGAAGTTATGTGAAACATGGAGGAAATGCTTGGTAGTAAAATTACTGGGGAAAACATTGGAGTATTTAACTATAAGGGATCGCCTTAAGGGTTTATGGTTTCTATATTGTCAATTTTGA
Predicted protein sequences of Glyma08g24221
>Glyma08g24221.1   sequence type=predicted peptide   gene model=Glyma08g24221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSPAPKGDSSSTPPPKPPNRLPNANFMKPSFKEKVVGQPLEPNVVHNLVEETFLRLELKEGNFLLLKFTVEASKFEKLCETWRKCLVVKLLGKTLEYLTIRDRLKGLWFLYCQF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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