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Report for Sequence Feature Glyma08g24180
Feature Type: gene_model
Chromosome: Gm08
Start: 18386235
stop: 18400851
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g24180
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G13062 AT
Annotation by Michelle Graham. TAIR10: Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr3:4184777-4186795 FORWARD LENGTH=403
SoyBase E_val: 8.00E-138 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2761
KOG
START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer
JGI ISS
PTHR19308 Panther
PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
JGI ISS
PF01852 PFAM
START domain
JGI ISS
UniRef100_B9RHS6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylcholine transfer protein, putative n=1 Tax=Ricinus communis RepID=B9RHS6_RICCO
SoyBase E_val: 1.00E-136 ISS
UniRef100_I1KVV8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVV8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g24180
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g24180
Paralog Evidence Comments
Glyma07g00290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g24180 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g226000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g24180
Transcripts of Glyma08g24180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g24180.2 sequence type=transcript gene model=Glyma08g24180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTTTTGCTGGAGAACAATTTGTGATAGCCATGTACTATTTTTATTTTTTTTATTGTAAGTAGCAAAATAAAATAAGAGGTACTGGGCAATGGAAAGGGGTAGAGGAGAGAGAATTGATTGAACGAGTCGAGGAGTGGAAAAAGAATATGAATACGATAACGACGACGACGATGACGATGAGTGTATTAAACATCTATGGCTATGGCTATGGTGTTGTAGCTGTTGTTGTGTTCCTTATATTATTGCTTTGGCAGCGTCACAGATTTTTCTTCGCTTCATCTCCGTCGTCTCCATCCACTTCATTACTGCTCTTCGATTCTATCAATTCAAACTCAAACTCCAGAAGCAGAACCTCAAATTTTGTGACAGATGCAGATTTGAAATTTTTAATGGAGATTTTGGATGAGAAGCTCGGCAGTGATAAATGGGAGGATGTTCTAGATAAAAGAAACCATCATCTAAGCTACAGTGTGAAATGCTGCAGGCCTAAGAATGGTCCCCTGAAATATTTGAGCAAGACTGTGTTCAATGACATTTCATCAGAGATGCTAAGAAACTTCTACATGGACAATGATTACAGAAAGCAGTGGGATAAAACACTGGTTGAGCATAAACAACTGCAGGTAGACAAATCTGATGGTACTGAAGTTGGTCATACAATTAAAAAGTTCCCTCTTTTAAAGCCTAGAGAATATGTGCTAGCTTGGAAGTTGTGGGAGGGGAGTGATAAAACATTTTACTGTTTTATGAAGGAATGTGAGCATCCTTTGGCACCACGACAGAGAAAATATGTACGAGTTGAGTTTTTTAGATCTGGCTGGCAAATAAGAGAAGTACCTGGTAGCAATGCCTGTGAGATCACAATGTTTCATCAAGAAGATGCTGGTTTAAATACGGAGATGGCTAAGCTGGCCTTTCGCAAGGGCATATGGAACTATGTATGTAAGATGGATAACGCGCTTAGAAGATACTCTGTTATAGGCTATCATTTATCAAGTTCAGTTACCACTTCAATCGATTTAATGCAGAAGGTACCTGCTTGCTTGGACACTATTTCGAGTAACATCTCTCCAGCAAATCCTACCGTCTTCCATGATCAAGTTACTGATGAATCTCAAATTAGGATGATCCAAAGAAGGCCATCAAGAAAGTTGATAGCCAATGGTTTGTTGCTTCTAGGGGGTGCTACTGCTATATGCCTGTCTCGTGGTCACTCTAGCCTAGGTGCTAAAGTTGCCATGGCATACATCATAAACAAACTTAGTAAGCGTGGTGCTAGATCAAACCAAAGCAAACAAAGTTGAAGGTAAGATTGATTTTATTTTTATATAATATTAGTCACCAATGTAATATTGAATAGTCAAGATTATATATAATCTTAAATAATGTGAATAATCCTTATGATCTAGATGATTTACACATTATTGCATATATAATCTACTAGTATGAGAGCTCATGCATTCTACTAGTATGAGAGCCTATGCAATGCACGGGTAAATTGATTAAGCTTCGAATATTTAGTTGTATTCTATGTTTTTTTGCAAATTATTATATTTTGTATCC
Coding sequences of Glyma08g24180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g24180.1 sequence type=CDS gene model=Glyma08g24180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATACGATAACGACGACGACGATGACGATGAGTGTATTAAACATCTATGGCTATGGCTATGGTGTTGTAGCTGTTGTTGTGTTCCTTATATTATTGCTTTGGCAGCGTCACAGATTTTTCTTCGCTTCATCTCCGTCGTCTCCATCCACTTCATTACTGCTCTTCGATTCTATCAATTCAAACTCAAACTCCAGAAGCAGAACCTCAAATTTTGTGACAGATGCAGATTTGAAATTTTTAATGGAGATTTTGGATGAGAAGCTCGGCAGTGATAAATGGGAGGATGTTCTAGATAAAAGAAACCATCATCTAAGCTACAGTGTGAAATGCTGCAGGCCTAAGAATGGTCCCCTGAAATATTTGAGCAAGACTGTGTTCAATGACATTTCATCAGAGATGCTAAGAAACTTCTACATGGACAATGATTACAGAAAGCAGTGGGATAAAACACTGGTTGAGCATAAACAACTGCAGGTAGACAAATCTGATGGTACTGAAGTTGGTCATACAATTAAAAAGTTCCCTCTTTTAAAGCCTAGAGAATATGTGCTAGCTTGGAAGTTGTGGGAGGGGAGTGATAAAACATTTTACTGTTTTATGAAGGAATGTGAGCATCCTTTGGCACCACGACAGAGAAAATATGTACGAGTTGAGTTTTTTAGATCTGGCTGGCAAATAAGAGAAGTACCTGGTAGCAATGCCTGTGAGATCACAATGTTTCATCAAGAAGATGCTGGTTTAAATACGGAGATGGCTAAGCTGGCCTTTCGCAAGGGCATATGGAACTATGTATGTAAGATGGATAACGCGCTTAGAAGATACTCTGTTATAGGCTATCATTTATCAAGTTCAGTTACCACTTCAATCGATTTAATGCAGAAGGTACCTGCTTGCTTGGACACTATTTCGAGTAACATCTCTCCAGCAAATCCTACCGTCTTCCATGATCAAGTTACTGATGAATCTCAAATTAGGATGATCCAAAGAAGGCCATCAAGAAAGTTGATAGCCAATGGTTTGTTGCTTCTAGGGGGTGCTACTGCTATATGCCTGTCTCGTGGTCACTCTAGCCTAGGTGCTAAAGTTGCCATGGCATACATCATAAACAAACTTAGTAAGCGTGGTGCTAGATCAAACCAAAGCAAACAAAGTTGA
>Glyma08g24180.2 sequence type=CDS gene model=Glyma08g24180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATACGATAACGACGACGACGATGACGATGAGTGTATTAAACATCTATGGCTATGGCTATGGTGTTGTAGCTGTTGTTGTGTTCCTTATATTATTGCTTTGGCAGCGTCACAGATTTTTCTTCGCTTCATCTCCGTCGTCTCCATCCACTTCATTACTGCTCTTCGATTCTATCAATTCAAACTCAAACTCCAGAAGCAGAACCTCAAATTTTGTGACAGATGCAGATTTGAAATTTTTAATGGAGATTTTGGATGAGAAGCTCGGCAGTGATAAATGGGAGGATGTTCTAGATAAAAGAAACCATCATCTAAGCTACAGTGTGAAATGCTGCAGGCCTAAGAATGGTCCCCTGAAATATTTGAGCAAGACTGTGTTCAATGACATTTCATCAGAGATGCTAAGAAACTTCTACATGGACAATGATTACAGAAAGCAGTGGGATAAAACACTGGTTGAGCATAAACAACTGCAGGTAGACAAATCTGATGGTACTGAAGTTGGTCATACAATTAAAAAGTTCCCTCTTTTAAAGCCTAGAGAATATGTGCTAGCTTGGAAGTTGTGGGAGGGGAGTGATAAAACATTTTACTGTTTTATGAAGGAATGTGAGCATCCTTTGGCACCACGACAGAGAAAATATGTACGAGTTGAGTTTTTTAGATCTGGCTGGCAAATAAGAGAAGTACCTGGTAGCAATGCCTGTGAGATCACAATGTTTCATCAAGAAGATGCTGGTTTAAATACGGAGATGGCTAAGCTGGCCTTTCGCAAGGGCATATGGAACTATGTATGTAAGATGGATAACGCGCTTAGAAGATACTCTGTTATAGGCTATCATTTATCAAGTTCAGTTACCACTTCAATCGATTTAATGCAGAAGGTACCTGCTTGCTTGGACACTATTTCGAGTAACATCTCTCCAGCAAATCCTACCGTCTTCCATGATCAAGTTACTGATGAATCTCAAATTAGGATGATCCAAAGAAGGCCATCAAGAAAGTTGATAGCCAATGGTTTGTTGCTTCTAGGGGGTGCTACTGCTATATGCCTGTCTCGTGGTCACTCTAGCCTAGGTGCTAAAGTTGCCATGGCATACATCATAAACAAACTTAGTAAGCGTGGTGCTAGATCAAACCAAAGCAAACAAAGTTGA
Predicted protein sequences of Glyma08g24180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g24180.1 sequence type=predicted peptide gene model=Glyma08g24180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNTITTTTMTMSVLNIYGYGYGVVAVVVFLILLLWQRHRFFFASSPSSPSTSLLLFDSINSNSNSRSRTSNFVTDADLKFLMEILDEKLGSDKWEDVLDKRNHHLSYSVKCCRPKNGPLKYLSKTVFNDISSEMLRNFYMDNDYRKQWDKTLVEHKQLQVDKSDGTEVGHTIKKFPLLKPREYVLAWKLWEGSDKTFYCFMKECEHPLAPRQRKYVRVEFFRSGWQIREVPGSNACEITMFHQEDAGLNTEMAKLAFRKGIWNYVCKMDNALRRYSVIGYHLSSSVTTSIDLMQKVPACLDTISSNISPANPTVFHDQVTDESQIRMIQRRPSRKLIANGLLLLGGATAICLSRGHSSLGAKVAMAYIINKLSKRGARSNQSKQS*
>Glyma08g24180.2 sequence type=predicted peptide gene model=Glyma08g24180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNTITTTTMTMSVLNIYGYGYGVVAVVVFLILLLWQRHRFFFASSPSSPSTSLLLFDSINSNSNSRSRTSNFVTDADLKFLMEILDEKLGSDKWEDVLDKRNHHLSYSVKCCRPKNGPLKYLSKTVFNDISSEMLRNFYMDNDYRKQWDKTLVEHKQLQVDKSDGTEVGHTIKKFPLLKPREYVLAWKLWEGSDKTFYCFMKECEHPLAPRQRKYVRVEFFRSGWQIREVPGSNACEITMFHQEDAGLNTEMAKLAFRKGIWNYVCKMDNALRRYSVIGYHLSSSVTTSIDLMQKVPACLDTISSNISPANPTVFHDQVTDESQIRMIQRRPSRKLIANGLLLLGGATAICLSRGHSSLGAKVAMAYIINKLSKRGARSNQSKQS*