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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma08g24180

Feature Type:gene_model
Chromosome:Gm08
Start:18386235
stop:18400851
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13062AT Annotation by Michelle Graham. TAIR10: Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr3:4184777-4186795 FORWARD LENGTH=403 SoyBaseE_val: 8.00E-138ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG2761 KOG START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer JGI ISS
PTHR19308Panther PHOSPHATIDYLCHOLINE TRANSFER PROTEIN JGI ISS
PF01852PFAM START domain JGI ISS
UniRef100_B9RHS6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylcholine transfer protein, putative n=1 Tax=Ricinus communis RepID=B9RHS6_RICCO SoyBaseE_val: 1.00E-136ISS
UniRef100_I1KVV8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVV8_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g24180 not represented in the dataset

Glyma08g24180 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g00290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g226000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g24180.2   sequence type=transcript   gene model=Glyma08g24180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTGCTGGAGAACAATTTGTGATAGCCATGTACTATTTTTATTTTTTTTATTGTAAGTAGCAAAATAAAATAAGAGGTACTGGGCAATGGAAAGGGGTAGAGGAGAGAGAATTGATTGAACGAGTCGAGGAGTGGAAAAAGAATATGAATACGATAACGACGACGACGATGACGATGAGTGTATTAAACATCTATGGCTATGGCTATGGTGTTGTAGCTGTTGTTGTGTTCCTTATATTATTGCTTTGGCAGCGTCACAGATTTTTCTTCGCTTCATCTCCGTCGTCTCCATCCACTTCATTACTGCTCTTCGATTCTATCAATTCAAACTCAAACTCCAGAAGCAGAACCTCAAATTTTGTGACAGATGCAGATTTGAAATTTTTAATGGAGATTTTGGATGAGAAGCTCGGCAGTGATAAATGGGAGGATGTTCTAGATAAAAGAAACCATCATCTAAGCTACAGTGTGAAATGCTGCAGGCCTAAGAATGGTCCCCTGAAATATTTGAGCAAGACTGTGTTCAATGACATTTCATCAGAGATGCTAAGAAACTTCTACATGGACAATGATTACAGAAAGCAGTGGGATAAAACACTGGTTGAGCATAAACAACTGCAGGTAGACAAATCTGATGGTACTGAAGTTGGTCATACAATTAAAAAGTTCCCTCTTTTAAAGCCTAGAGAATATGTGCTAGCTTGGAAGTTGTGGGAGGGGAGTGATAAAACATTTTACTGTTTTATGAAGGAATGTGAGCATCCTTTGGCACCACGACAGAGAAAATATGTACGAGTTGAGTTTTTTAGATCTGGCTGGCAAATAAGAGAAGTACCTGGTAGCAATGCCTGTGAGATCACAATGTTTCATCAAGAAGATGCTGGTTTAAATACGGAGATGGCTAAGCTGGCCTTTCGCAAGGGCATATGGAACTATGTATGTAAGATGGATAACGCGCTTAGAAGATACTCTGTTATAGGCTATCATTTATCAAGTTCAGTTACCACTTCAATCGATTTAATGCAGAAGGTACCTGCTTGCTTGGACACTATTTCGAGTAACATCTCTCCAGCAAATCCTACCGTCTTCCATGATCAAGTTACTGATGAATCTCAAATTAGGATGATCCAAAGAAGGCCATCAAGAAAGTTGATAGCCAATGGTTTGTTGCTTCTAGGGGGTGCTACTGCTATATGCCTGTCTCGTGGTCACTCTAGCCTAGGTGCTAAAGTTGCCATGGCATACATCATAAACAAACTTAGTAAGCGTGGTGCTAGATCAAACCAAAGCAAACAAAGTTGAAGGTAAGATTGATTTTATTTTTATATAATATTAGTCACCAATGTAATATTGAATAGTCAAGATTATATATAATCTTAAATAATGTGAATAATCCTTATGATCTAGATGATTTACACATTATTGCATATATAATCTACTAGTATGAGAGCTCATGCATTCTACTAGTATGAGAGCCTATGCAATGCACGGGTAAATTGATTAAGCTTCGAATATTTAGTTGTATTCTATGTTTTTTTGCAAATTATTATATTTTGTATCC

>Glyma08g24180.1   sequence type=CDS   gene model=Glyma08g24180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATACGATAACGACGACGACGATGACGATGAGTGTATTAAACATCTATGGCTATGGCTATGGTGTTGTAGCTGTTGTTGTGTTCCTTATATTATTGCTTTGGCAGCGTCACAGATTTTTCTTCGCTTCATCTCCGTCGTCTCCATCCACTTCATTACTGCTCTTCGATTCTATCAATTCAAACTCAAACTCCAGAAGCAGAACCTCAAATTTTGTGACAGATGCAGATTTGAAATTTTTAATGGAGATTTTGGATGAGAAGCTCGGCAGTGATAAATGGGAGGATGTTCTAGATAAAAGAAACCATCATCTAAGCTACAGTGTGAAATGCTGCAGGCCTAAGAATGGTCCCCTGAAATATTTGAGCAAGACTGTGTTCAATGACATTTCATCAGAGATGCTAAGAAACTTCTACATGGACAATGATTACAGAAAGCAGTGGGATAAAACACTGGTTGAGCATAAACAACTGCAGGTAGACAAATCTGATGGTACTGAAGTTGGTCATACAATTAAAAAGTTCCCTCTTTTAAAGCCTAGAGAATATGTGCTAGCTTGGAAGTTGTGGGAGGGGAGTGATAAAACATTTTACTGTTTTATGAAGGAATGTGAGCATCCTTTGGCACCACGACAGAGAAAATATGTACGAGTTGAGTTTTTTAGATCTGGCTGGCAAATAAGAGAAGTACCTGGTAGCAATGCCTGTGAGATCACAATGTTTCATCAAGAAGATGCTGGTTTAAATACGGAGATGGCTAAGCTGGCCTTTCGCAAGGGCATATGGAACTATGTATGTAAGATGGATAACGCGCTTAGAAGATACTCTGTTATAGGCTATCATTTATCAAGTTCAGTTACCACTTCAATCGATTTAATGCAGAAGGTACCTGCTTGCTTGGACACTATTTCGAGTAACATCTCTCCAGCAAATCCTACCGTCTTCCATGATCAAGTTACTGATGAATCTCAAATTAGGATGATCCAAAGAAGGCCATCAAGAAAGTTGATAGCCAATGGTTTGTTGCTTCTAGGGGGTGCTACTGCTATATGCCTGTCTCGTGGTCACTCTAGCCTAGGTGCTAAAGTTGCCATGGCATACATCATAAACAAACTTAGTAAGCGTGGTGCTAGATCAAACCAAAGCAAACAAAGTTGA

>Glyma08g24180.2   sequence type=CDS   gene model=Glyma08g24180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATACGATAACGACGACGACGATGACGATGAGTGTATTAAACATCTATGGCTATGGCTATGGTGTTGTAGCTGTTGTTGTGTTCCTTATATTATTGCTTTGGCAGCGTCACAGATTTTTCTTCGCTTCATCTCCGTCGTCTCCATCCACTTCATTACTGCTCTTCGATTCTATCAATTCAAACTCAAACTCCAGAAGCAGAACCTCAAATTTTGTGACAGATGCAGATTTGAAATTTTTAATGGAGATTTTGGATGAGAAGCTCGGCAGTGATAAATGGGAGGATGTTCTAGATAAAAGAAACCATCATCTAAGCTACAGTGTGAAATGCTGCAGGCCTAAGAATGGTCCCCTGAAATATTTGAGCAAGACTGTGTTCAATGACATTTCATCAGAGATGCTAAGAAACTTCTACATGGACAATGATTACAGAAAGCAGTGGGATAAAACACTGGTTGAGCATAAACAACTGCAGGTAGACAAATCTGATGGTACTGAAGTTGGTCATACAATTAAAAAGTTCCCTCTTTTAAAGCCTAGAGAATATGTGCTAGCTTGGAAGTTGTGGGAGGGGAGTGATAAAACATTTTACTGTTTTATGAAGGAATGTGAGCATCCTTTGGCACCACGACAGAGAAAATATGTACGAGTTGAGTTTTTTAGATCTGGCTGGCAAATAAGAGAAGTACCTGGTAGCAATGCCTGTGAGATCACAATGTTTCATCAAGAAGATGCTGGTTTAAATACGGAGATGGCTAAGCTGGCCTTTCGCAAGGGCATATGGAACTATGTATGTAAGATGGATAACGCGCTTAGAAGATACTCTGTTATAGGCTATCATTTATCAAGTTCAGTTACCACTTCAATCGATTTAATGCAGAAGGTACCTGCTTGCTTGGACACTATTTCGAGTAACATCTCTCCAGCAAATCCTACCGTCTTCCATGATCAAGTTACTGATGAATCTCAAATTAGGATGATCCAAAGAAGGCCATCAAGAAAGTTGATAGCCAATGGTTTGTTGCTTCTAGGGGGTGCTACTGCTATATGCCTGTCTCGTGGTCACTCTAGCCTAGGTGCTAAAGTTGCCATGGCATACATCATAAACAAACTTAGTAAGCGTGGTGCTAGATCAAACCAAAGCAAACAAAGTTGA

>Glyma08g24180.1   sequence type=predicted peptide   gene model=Glyma08g24180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTITTTTMTMSVLNIYGYGYGVVAVVVFLILLLWQRHRFFFASSPSSPSTSLLLFDSINSNSNSRSRTSNFVTDADLKFLMEILDEKLGSDKWEDVLDKRNHHLSYSVKCCRPKNGPLKYLSKTVFNDISSEMLRNFYMDNDYRKQWDKTLVEHKQLQVDKSDGTEVGHTIKKFPLLKPREYVLAWKLWEGSDKTFYCFMKECEHPLAPRQRKYVRVEFFRSGWQIREVPGSNACEITMFHQEDAGLNTEMAKLAFRKGIWNYVCKMDNALRRYSVIGYHLSSSVTTSIDLMQKVPACLDTISSNISPANPTVFHDQVTDESQIRMIQRRPSRKLIANGLLLLGGATAICLSRGHSSLGAKVAMAYIINKLSKRGARSNQSKQS*

>Glyma08g24180.2   sequence type=predicted peptide   gene model=Glyma08g24180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTITTTTMTMSVLNIYGYGYGVVAVVVFLILLLWQRHRFFFASSPSSPSTSLLLFDSINSNSNSRSRTSNFVTDADLKFLMEILDEKLGSDKWEDVLDKRNHHLSYSVKCCRPKNGPLKYLSKTVFNDISSEMLRNFYMDNDYRKQWDKTLVEHKQLQVDKSDGTEVGHTIKKFPLLKPREYVLAWKLWEGSDKTFYCFMKECEHPLAPRQRKYVRVEFFRSGWQIREVPGSNACEITMFHQEDAGLNTEMAKLAFRKGIWNYVCKMDNALRRYSVIGYHLSSSVTTSIDLMQKVPACLDTISSNISPANPTVFHDQVTDESQIRMIQRRPSRKLIANGLLLLGGATAICLSRGHSSLGAKVAMAYIINKLSKRGARSNQSKQS*







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