Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g24170): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g24170): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma08g24170
Feature Type: gene_model
Chromosome: Gm08
Start: 18368386
stop: 18375511
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g24170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G78980 AT
Annotation by Michelle Graham. TAIR10: STRUBBELIG-receptor family 5 | chr1:29707923-29711266 REVERSE LENGTH=699
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0007169 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0004713 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: kinase activity
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1187
KOG
Serine/threonine protein kinase
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF463 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00560 PFAM
Leucine Rich Repeat
JGI ISS
PF07714 PFAM
Protein tyrosine kinase
JGI ISS
PF08263 PFAM
Leucine rich repeat N-terminal domain
JGI ISS
UniRef100_G7JUF1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein STRUBBELIG-RECEPTOR FAMILY n=1 Tax=Medicago truncatula RepID=G7JUF1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002338C56 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338C56 related cluster n=1 Tax=unknown RepID=UPI0002338C56
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g24170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g24170
Paralog Evidence Comments
Glyma07g00300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g24170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g225900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g24170
Transcripts of Glyma08g24170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g24170.2 sequence type=transcript gene model=Glyma08g24170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTTAAAGGACGGTCAAGATTCAAGAATGTAATCTAGATCTTTCTAAGAACGACTTCACTGGAAGTATACCTTATTCATTCTCTGAGATGGATGACCTCAACTACCTAAATCTTGCACATAATCAGCTCAAAAACCAGTTGGGCGATATGTTTGGGAAGCTCAGTAAACTCAAACAACTGGATGTATCATTCAATTCACTATCAGGAGACCTACCCCAGAGTCTCAAATCGCTCAAAAGCCTCGAGAAGTTGCACCTACAAAACAACCAATTCACTGGTTCAGTAAATGTCCTTGCCAGCCTTCCACTTGAAGATTTGAATGTTGAAAACAACAAATTTACTGGTTGGGTTCCTGAGGAGTTAAAGGAGATAAATAATTTGCAAACTGGAGGAAACTCTTGGTCAAGTGGACCAGCACCTCCTCCTCCTCCTGGTACTCCCCCTATCAAGCATTCCGAGAAAAAGAATGATAAATCTGTTATTAGTGGAATAGCTATAGCAGGCATAGCCTTTGGTGTACTAGCAGTAATTATAATTGTTGTTGCTCTTTCTAAGAGAAGATCATCAAAAACTTCTTCACATTTTATCGATGAAGACAGGAATAGCCAGCATAGATCTTTTACACCCCTTGCATCTCAGGAGTTATCAAAAGATTCGGGTCATGATGTCAGCAAAGACTACATAGGATTTAAGTCAATGGATTCTACTTCGATTGACGTAAAGGCTTTGCAAAAATCTCCATCAGTTAGTGTTAGGTCATCAGTCTCCGATTGTGTGCAATCCTTTAATGACAACGAGTTTGCGAATCGTCTAAATTCTAAGAGAAGCACATCAATCCGTGTTACTACTTTTTCACATGCAGAGTTACAGTCTGCTACTGCTAATTTTGCTTCTGGTCGACTTCTTGGTGAAGGATCCATAGGATGTGTTTATCGGGCTAAATATGCTGATGGAAAGGTATTGGCTGTAAAAAAGATCAATCCTTCGCTTTTGCATGGTGGTCCTTCCGAGGAATTCTCTCAGATTGTTTCAAGGATCAGCAAACTTCACCACCCAAATATTGTTGAGCTTGTCGGTTATTGTTCGGAACCGGAGCACATGTTAATATATGATTATTTCAGAAATGGCTCCCTCCATGACTTTTTACACTTATCGGACGACTTCAGCAAACCCCTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAGCAGCTCGGGCTGTTGAGTACCTACATGAAATTTGTTCGCCTCCTTTATTGCACAAGAATATTAAGTCTTCCAATATTTTGCTTGACACCGATCTGAATCCTCGTCTCTCAGACTATGGTTTGGAATCCTTCTACCAGCGTACTGGCCAAAATCTTGGGGCAGGATATAATGCACCAGAATGCACAAAACCTTCAGCCTATACCCAGAAGAGTGATGTATACAGTTTTGGAGTAGTGATGCTGGAACTTTTGACAGGTCGAATGCCTTTAGACAGTTCAAAGACAAAAGCAGAACAAAGCCTGGTTCGTTGGGCCACTCCACAGCTTCATGACATTAATGCGGTGGAAAAAATGGTGGACCCTGCCTTGCGGGGGCTTTACCCTCCTAAGTCACTCTTCCGATTTGCTGATATTGTCGCCCTCTGTGTTCAGTCTGAGCCTGAATTTCGGCCACCTGTGTCAGAGTTAGTTCAGGCTTTGGTGCGATTAGTTCAACGTTCAAGTATGACAATGAGGGAGGATTTTGAGTGAAGAAGACTTCGATAGATGTATTTTTGGTTTTTCTTTTTCTCCCATTAAAAGTAGTTGTAGCTTGGACAAGAAAAGCTTCTGGAT
Coding sequences of Glyma08g24170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g24170.1 sequence type=CDS gene model=Glyma08g24170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCACCACAACCACAACCTTAACCTTGCAAGGTTGTGGATTGCTTTGCTTGCGGTCTCAACCACCGTAGTTCATTGCAAAACTGCCTCCCAAGATGTTTCAGCCCTTAATGTGATGTATACAAGCTTAAATTCCCCTTCAAAGCTGAGTGGCTGGAAATCAAGTGGAGGTGATCCGTGTGGCGACTCCTGGGAAGGAATCAAATGCTCAGGATCTTCTGTCACAGAAATAAATTTATCTGACCTGGGCCTTTCCGGATCAATGGGCTACCAGTTGTCCAGCTTAAAATCAGTTACCGACTTTGATTTGAGCAACAACAACTTCAAGGGTGATATACCATATCAACTTCCTCCAAATGCTCGTTATATAGATCTTTCTAAGAACGACTTCACTGGAAGTATACCTTATTCATTCTCTGAGATGGATGACCTCAACTACCTAAATCTTGCACATAATCAGCTCAAAAACCAGTTGGGCGATATGTTTGGGAAGCTCAGTAAACTCAAACAACTGGATGTATCATTCAATTCACTATCAGGAGACCTACCCCAGAGTCTCAAATCGCTCAAAAGCCTCGAGAAGTTGCACCTACAAAACAACCAATTCACTGGTTCAGTAAATGTCCTTGCCAGCCTTCCACTTGAAGATTTGAATGTTGAAAACAACAAATTTACTGGTTGGGTTCCTGAGGAGTTAAAGGAGATAAATAATTTGCAAACTGGAGGAAACTCTTGGTCAAGTGGACCAGCACCTCCTCCTCCTCCTGGTACTCCCCCTATCAAGCATTCCGAGAAAAAGAATGATAAATCTGTTATTAGTGGAATAGCTATAGCAGGCATAGCCTTTGGTGTACTAGCAGTAATTATAATTGTTGTTGCTCTTTCTAAGAGAAGATCATCAAAAACTTCTTCACATTTTATCGATGAAGACAGGAATAGCCAGCATAGATCTTTTACACCCCTTGCATCTCAGGAGTTATCAAAAGATTCGGGTCATGATGTCAGCAAAGACTACATAGGATTTAAGTCAATGGATTCTACTTCGATTGACGTAAAGGCTTTGCAAAAATCTCCATCAGTTAGTGTTAGGTCATCAGTCTCCGATTGTGTGCAATCCTTTAATGACAACGAGTTTGCGAATCGTCTAAATTCTAAGAGAAGCACATCAATCCGTGTTACTACTTTTTCACATGCAGAGTTACAGTCTGCTACTGCTAATTTTGCTTCTGGTCGACTTCTTGGTGAAGGATCCATAGGATGTGTTTATCGGGCTAAATATGCTGATGGAAAGGTATTGGCTGTAAAAAAGATCAATCCTTCGCTTTTGCATGGTGGTCCTTCCGAGGAATTCTCTCAGATTGTTTCAAGGATCAGCAAACTTCACCACCCAAATATTGTTGAGCTTGTCGGTTATTGTTCGGAACCGGAGCACATGTTAATATATGATTATTTCAGAAATGGCTCCCTCCATGACTTTTTACACTTATCGGACGACTTCAGCAAACCCCTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAGCAGCTCGGGCTGTTGAGTACCTACATGAAATTTGTTCGCCTCCTTTATTGCACAAGAATATTAAGTCTTCCAATATTTTGCTTGACACCGATCTGAATCCTCGTCTCTCAGACTATGGTTTGGAATCCTTCTACCAGCGTACTGGCCAAAATCTTGGGGCAGGATATAATGCACCAGAATGCACAAAACCTTCAGCCTATACCCAGAAGAGTGATGTATACAGTTTTGGAGTAGTGATGCTGGAACTTTTGACAGGTCGAATGCCTTTAGACAGTTCAAAGACAAAAGCAGAACAAAGCCTGGTTCGTTGGGCCACTCCACAGCTTCATGACATTAATGCGGTGGAAAAAATGGTGGACCCTGCCTTGCGGGGGCTTTACCCTCCTAAGTCACTCTTCCGATTTGCTGATATTGTCGCCCTCTGTGTTCAGTCTGAGCCTGAATTTCGGCCACCTGTGTCAGAGTTAGTTCAGGCTTTGGTGCGATTAGTTCAACGTTCAAGTATGACAATGAGGGAGGATTTTGAGTGA
>Glyma08g24170.2 sequence type=CDS gene model=Glyma08g24170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGACCTCAACTACCTAAATCTTGCACATAATCAGCTCAAAAACCAGTTGGGCGATATGTTTGGGAAGCTCAGTAAACTCAAACAACTGGATGTATCATTCAATTCACTATCAGGAGACCTACCCCAGAGTCTCAAATCGCTCAAAAGCCTCGAGAAGTTGCACCTACAAAACAACCAATTCACTGGTTCAGTAAATGTCCTTGCCAGCCTTCCACTTGAAGATTTGAATGTTGAAAACAACAAATTTACTGGTTGGGTTCCTGAGGAGTTAAAGGAGATAAATAATTTGCAAACTGGAGGAAACTCTTGGTCAAGTGGACCAGCACCTCCTCCTCCTCCTGGTACTCCCCCTATCAAGCATTCCGAGAAAAAGAATGATAAATCTGTTATTAGTGGAATAGCTATAGCAGGCATAGCCTTTGGTGTACTAGCAGTAATTATAATTGTTGTTGCTCTTTCTAAGAGAAGATCATCAAAAACTTCTTCACATTTTATCGATGAAGACAGGAATAGCCAGCATAGATCTTTTACACCCCTTGCATCTCAGGAGTTATCAAAAGATTCGGGTCATGATGTCAGCAAAGACTACATAGGATTTAAGTCAATGGATTCTACTTCGATTGACGTAAAGGCTTTGCAAAAATCTCCATCAGTTAGTGTTAGGTCATCAGTCTCCGATTGTGTGCAATCCTTTAATGACAACGAGTTTGCGAATCGTCTAAATTCTAAGAGAAGCACATCAATCCGTGTTACTACTTTTTCACATGCAGAGTTACAGTCTGCTACTGCTAATTTTGCTTCTGGTCGACTTCTTGGTGAAGGATCCATAGGATGTGTTTATCGGGCTAAATATGCTGATGGAAAGGTATTGGCTGTAAAAAAGATCAATCCTTCGCTTTTGCATGGTGGTCCTTCCGAGGAATTCTCTCAGATTGTTTCAAGGATCAGCAAACTTCACCACCCAAATATTGTTGAGCTTGTCGGTTATTGTTCGGAACCGGAGCACATGTTAATATATGATTATTTCAGAAATGGCTCCCTCCATGACTTTTTACACTTATCGGACGACTTCAGCAAACCCCTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAGCAGCTCGGGCTGTTGAGTACCTACATGAAATTTGTTCGCCTCCTTTATTGCACAAGAATATTAAGTCTTCCAATATTTTGCTTGACACCGATCTGAATCCTCGTCTCTCAGACTATGGTTTGGAATCCTTCTACCAGCGTACTGGCCAAAATCTTGGGGCAGGATATAATGCACCAGAATGCACAAAACCTTCAGCCTATACCCAGAAGAGTGATGTATACAGTTTTGGAGTAGTGATGCTGGAACTTTTGACAGGTCGAATGCCTTTAGACAGTTCAAAGACAAAAGCAGAACAAAGCCTGGTTCGTTGGGCCACTCCACAGCTTCATGACATTAATGCGGTGGAAAAAATGGTGGACCCTGCCTTGCGGGGGCTTTACCCTCCTAAGTCACTCTTCCGATTTGCTGATATTGTCGCCCTCTGTGTTCAGTCTGAGCCTGAATTTCGGCCACCTGTGTCAGAGTTAGTTCAGGCTTTGGTGCGATTAGTTCAACGTTCAAGTATGACAATGAGGGAGGATTTTGAGTGA
Predicted protein sequences of Glyma08g24170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g24170.1 sequence type=predicted peptide gene model=Glyma08g24170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MHHNHNLNLARLWIALLAVSTTVVHCKTASQDVSALNVMYTSLNSPSKLSGWKSSGGDPCGDSWEGIKCSGSSVTEINLSDLGLSGSMGYQLSSLKSVTDFDLSNNNFKGDIPYQLPPNARYIDLSKNDFTGSIPYSFSEMDDLNYLNLAHNQLKNQLGDMFGKLSKLKQLDVSFNSLSGDLPQSLKSLKSLEKLHLQNNQFTGSVNVLASLPLEDLNVENNKFTGWVPEELKEINNLQTGGNSWSSGPAPPPPPGTPPIKHSEKKNDKSVISGIAIAGIAFGVLAVIIIVVALSKRRSSKTSSHFIDEDRNSQHRSFTPLASQELSKDSGHDVSKDYIGFKSMDSTSIDVKALQKSPSVSVRSSVSDCVQSFNDNEFANRLNSKRSTSIRVTTFSHAELQSATANFASGRLLGEGSIGCVYRAKYADGKVLAVKKINPSLLHGGPSEEFSQIVSRISKLHHPNIVELVGYCSEPEHMLIYDYFRNGSLHDFLHLSDDFSKPLTWNTRVRIALGAARAVEYLHEICSPPLLHKNIKSSNILLDTDLNPRLSDYGLESFYQRTGQNLGAGYNAPECTKPSAYTQKSDVYSFGVVMLELLTGRMPLDSSKTKAEQSLVRWATPQLHDINAVEKMVDPALRGLYPPKSLFRFADIVALCVQSEPEFRPPVSELVQALVRLVQRSSMTMREDFE*
>Glyma08g24170.2 sequence type=predicted peptide gene model=Glyma08g24170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDDLNYLNLAHNQLKNQLGDMFGKLSKLKQLDVSFNSLSGDLPQSLKSLKSLEKLHLQNNQFTGSVNVLASLPLEDLNVENNKFTGWVPEELKEINNLQTGGNSWSSGPAPPPPPGTPPIKHSEKKNDKSVISGIAIAGIAFGVLAVIIIVVALSKRRSSKTSSHFIDEDRNSQHRSFTPLASQELSKDSGHDVSKDYIGFKSMDSTSIDVKALQKSPSVSVRSSVSDCVQSFNDNEFANRLNSKRSTSIRVTTFSHAELQSATANFASGRLLGEGSIGCVYRAKYADGKVLAVKKINPSLLHGGPSEEFSQIVSRISKLHHPNIVELVGYCSEPEHMLIYDYFRNGSLHDFLHLSDDFSKPLTWNTRVRIALGAARAVEYLHEICSPPLLHKNIKSSNILLDTDLNPRLSDYGLESFYQRTGQNLGAGYNAPECTKPSAYTQKSDVYSFGVVMLELLTGRMPLDSSKTKAEQSLVRWATPQLHDINAVEKMVDPALRGLYPPKSLFRFADIVALCVQSEPEFRPPVSELVQALVRLVQRSSMTMREDFE*