Glyma08g24160 - SoyBase

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Report for Sequence Feature Glyma08g24160

Feature Type:	gene_model
Chromosome:	Gm08
Start:	18355984
stop:	18365598
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g24160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78955	AT	Annotation by Michelle Graham. TAIR10: camelliol C synthase 1 \| chr1:29689153-29694255 REVERSE LENGTH=769	SoyBase	E_val: 0	ISS
GO:0042300	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-amyrin synthase activity	SoyBase	N/A	ISS
GO:0090438	GO-mf	Annotation by Michelle Graham. GO Molecular Function: camelliol C synthase activity	SoyBase	N/A	ISS
KOG0497	KOG	Oxidosqualene-lanosterol cyclase and related proteins	JGI		ISS
PTHR11764	Panther	SQUALENE CYCLASES-RELATED	JGI		ISS
PTHR11764:SF3	Panther	CYCLOARTENOL SYNTHASE-RELATED	JGI		ISS
PF00432	PFAM	Prenyltransferase and squalene oxidase repeat	JGI		ISS
UniRef100_I1KVV5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KVV5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9MB42	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-amyrin synthase n=1 Tax=Glycyrrhiza glabra RepID=BAMS_GLYGL	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g24160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g24160

Paralog	Evidence	Comments
Glyma07g00330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g24160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g225800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g24160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g24160

Limit To All Plant Sequences

>Glyma08g24160.2   sequence type=transcript   gene model=Glyma08g24160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATGAGACTAGTCGATACATAACCATTGGTTGTGTGGAAAAGGTAGGTGTCACAACAATAATGCATATTGATTTTTTTTATCCTTGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATGGAATGACCATGCAAAGTTTTGGTAGTCAAGAATGGGATGCTGGCTTTGCTGTTCAAGCTTTTCTTGCCACTAACCTAATTGAAGAAATTGGTCCTACACTTGCAAAAGGACATGACTTCATCAAGAAGTCTCAGGTAAAAGATAATCCTCTTGGAGATTTTAAAAGTATGTATCGTCATATTTCTAAAGGATCTTGGACATTCTCTGATCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAAAGTTTAAAGTGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAAGATGGAACCTGAAAGGTTGTACGATTCAGTCAATGTCTTGTTGTCGCTTCAGAGTAAAAAAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAATTACTCAATCCCACAGAATTTTTTGCGGACATTGTAGTTGAACATGAATATGTTGAGTGCACTGGATCTGCAATCCAAGCTTTAGTTTTGTTCAAGAATCTATATCCAGGACATAGGAAGAAAGAGATAGAAAATTTCATTGCCAATGCAGTTCGATTCCTTGAAGATACACAAACAGCTGATGGTTCATGGTATGGAAACTGGGGAGTTTGCTTCACTTATGGCTCTTGGTTTGCACTTGGCGGTCTAGCAGCTGCTGGCAAGACTTACATCAATTGTGCTGCCATTCGCAAAGCCGTTAAATTTCTACTTTCAACACAGAGGGAAGACGGTGGATGGGGAGAGAGCTATCTTTCAAGCCCAAAAAAGATATATGTACCTCTAGAAGGAAGTCGATCAAATGTTGTACATACAGCATGGGCTCTTATGGGACTAATTCATGCTGGACAGGCGGATAGAGACCCTAAGCCTCTTCATCGAGCTGCAAAGTTGCTCATTAATTCTCAGTTGGAAGAGGGTGATTGGCCCCAGCAGGAAATCACAGGAGTATTCATGAAAAATTGCATGTTGCATTATCCAATGTACAGAGATATTTATCCAATGTGGGCTCTAGCTGAATATCGTAGGCGGGTTCCATTGCCTTCCACTGAAGTTTAATTTAGAAAGGTGTGAGCACAAAAGGCAAAGGCATTTTAATGAAGATTAGGGCAAATAAATCAAACAAGTTGTGTAATCAAGCTTAATCAATTTTCTCCCATTCCTATATGTTTATTTCCTAGATATATTGGTAAAAATTTTATTTCATGTTGGCTTGTATAGATGTTCTTAATGTTCCTATTATAATACAAAAATAAATTTATTGGAATACTACGC

Coding sequences of Glyma08g24160

Limit To All Plant Sequences

>Glyma08g24160.1   sequence type=CDS   gene model=Glyma08g24160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAGGCTGAAGATAGCAGAAGGTGGAAATGAGGCATACATATTCAGCACAAACAATTTTGTTGGGAGGCAGACATGGGAGTTTGATCCTGAAGCAGGGACTCCAGAGGAACGAGCCCAGGTTGAAGCAGCTCGTAAGGATTTCTACCACCACCGCTTCAAGGTCAAGCCCTGTGCTGACCTCCTTTGGCGTTTTCAGATTCTGAGAGAAAATAACTTCAAACAAACAATACCTAGTGTGAAGATAGAAGATGGAGAGGAAATAACTTACCAAAAAGTCACAAGCACTGTGAGAAGGGGCGCACATCACCTTGCGGCATTGCAGACCAGTGATGGCCATTGGCCTGCTCAAATTGCAGGTCCTCTGTTTTTTCTTCCTCCTTTGGTTTTCTGTATGTATATTACAGGGCATCTTGAATCAGTTTTTCCAGAAGAACATCGCAAAGAAATTCTCCGTTACATATATTATCACCAGAATGAAGATGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTTTGTACAGCACTGAACTATATATGCATGCGAATTCTTGGAGAAGGACCTAATGGAGGTCATTATAATGCTTGTGCTAGAGCAAGAAATTGGATTCGAGATCATGGTGGTGTAACACATATACCTTCATGGGGGAAAACTTGGCTTTCTATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGGCTAAGATGTGGTGTTATTGTCGATTGGTATACATGCCCATGTCTTATTTATATGGGAAGAGGTTTGTGGGTCCAATCACACCACTCATCTTACAATTAAGAGAAGAGCTATTCACTCAACCTTATGAAAAAGTTAATTGGAAGAAAGCACGTCACCAATATGCAAAGGAAGATCTTTATTATCCACATCCTTTGGTACAAGATCTAATATGGGATAGTTTATACATATTTACTGAGCCATTGCTTACTCGTTGGCCTTTCAACAAGTTGATTAGAGAAAAAGCCCTTCAAGTAACAATGAAGCATATTCATTACGAAGATGAGACTAGTCGATACATAACCATTGGTTGTGTGGAAAAGGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATGGAATGACCATGCAAAGTTTTGGTAGTCAAGAATGGGATGCTGGCTTTGCTGTTCAAGCTTTTCTTGCCACTAACCTAATTGAAGAAATTGGTCCTACACTTGCAAAAGGACATGACTTCATCAAGAAGTCTCAGGTAAAAGATAATCCTCTTGGAGATTTTAAAAGTATGTATCGTCATATTTCTAAAGGATCTTGGACATTCTCTGATCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAAAGTTTAAAGTGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAAGATGGAACCTGAAAGGTTGTACGATTCAGTCAATGTCTTGTTGTCGCTTCAGGCAAGGCTGACAATTAATGATGATATGATGGGCTCTTTTCTCAAATTCAACACCACGTCATTTAGTAAAAAAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAATTACTCAATCCCACAGAATTTTTTGCGGACATTGTAGTTGAACATGAATATGTTGAGTGCACTGGATCTGCAATCCAAGCTTTAGTTTTGTTCAAGAATCTATATCCAGGACATAGGAAGAAAGAGATAGAAAATTTCATTGCCAATGCAGTTCGATTCCTTGAAGATACACAAACAGCTGATGGTTCATGGTATGGAAACTGGGGAGTTTGCTTCACTTATGGCTCTTGGTTTGCACTTGGCGGTCTAGCAGCTGCTGGCAAGACTTACATCAATTGTGCTGCCATTCGCAAAGCCGTTAAATTTCTACTTTCAACACAGAGGGAAGACGGTGGATGGGGAGAGAGCTATCTTTCAAGCCCAAAAAAGATATATGTACCTCTAGAAGGAAGTCGATCAAATGTTGTACATACAGCATGGGCTCTTATGGGACTAATTCATGCTGGACAGGCGGATAGAGACCCTAAGCCTCTTCATCGAGCTGCAAAGTTGCTCATTAATTCTCAGTTGGAAGAGGGTGATTGGCCCCAGCAGGAAATCACAGGAGTATTCATGAAAAATTGCATGTTGCATTATCCAATGTACAGAGATATTTATCCAATGTGGGCTCTAGCTGAATATCGTAGGCGGGTTCCATTGCCTTCCACTGAAGTTTAA

>Glyma08g24160.2   sequence type=CDS   gene model=Glyma08g24160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATGGAATGACCATGCAAAGTTTTGGTAGTCAAGAATGGGATGCTGGCTTTGCTGTTCAAGCTTTTCTTGCCACTAACCTAATTGAAGAAATTGGTCCTACACTTGCAAAAGGACATGACTTCATCAAGAAGTCTCAGGTAAAAGATAATCCTCTTGGAGATTTTAAAAGTATGTATCGTCATATTTCTAAAGGATCTTGGACATTCTCTGATCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAAAGTTTAAAGTGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAAGATGGAACCTGAAAGGTTGTACGATTCAGTCAATGTCTTGTTGTCGCTTCAGAGTAAAAAAGGTGGTTTAGCTGCATGGGAGCTTGCAGGAGCTCAAGAGTGGTTAGAATTACTCAATCCCACAGAATTTTTTGCGGACATTGTAGTTGAACATGAATATGTTGAGTGCACTGGATCTGCAATCCAAGCTTTAGTTTTGTTCAAGAATCTATATCCAGGACATAGGAAGAAAGAGATAGAAAATTTCATTGCCAATGCAGTTCGATTCCTTGAAGATACACAAACAGCTGATGGTTCATGGTATGGAAACTGGGGAGTTTGCTTCACTTATGGCTCTTGGTTTGCACTTGGCGGTCTAGCAGCTGCTGGCAAGACTTACATCAATTGTGCTGCCATTCGCAAAGCCGTTAAATTTCTACTTTCAACACAGAGGGAAGACGGTGGATGGGGAGAGAGCTATCTTTCAAGCCCAAAAAAGATATATGTACCTCTAGAAGGAAGTCGATCAAATGTTGTACATACAGCATGGGCTCTTATGGGACTAATTCATGCTGGACAGGCGGATAGAGACCCTAAGCCTCTTCATCGAGCTGCAAAGTTGCTCATTAATTCTCAGTTGGAAGAGGGTGATTGGCCCCAGCAGGAAATCACAGGAGTATTCATGAAAAATTGCATGTTGCATTATCCAATGTACAGAGATATTTATCCAATGTGGGCTCTAGCTGAATATCGTAGGCGGGTTCCATTGCCTTCCACTGAAGTTTAA

Predicted protein sequences of Glyma08g24160

Limit To All Plant Sequences

>Glyma08g24160.1   sequence type=predicted peptide   gene model=Glyma08g24160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWRLKIAEGGNEAYIFSTNNFVGRQTWEFDPEAGTPEERAQVEAARKDFYHHRFKVKPCADLLWRFQILRENNFKQTIPSVKIEDGEEITYQKVTSTVRRGAHHLAALQTSDGHWPAQIAGPLFFLPPLVFCMYITGHLESVFPEEHRKEILRYIYYHQNEDGGWGLHIEGHSTMFCTALNYICMRILGEGPNGGHYNACARARNWIRDHGGVTHIPSWGKTWLSILGVFDWCGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLREELFTQPYEKVNWKKARHQYAKEDLYYPHPLVQDLIWDSLYIFTEPLLTRWPFNKLIREKALQVTMKHIHYEDETSRYITIGCVEKVLCMLACWVEDPNGDAFKKHLARIPDYLWVSEDGMTMQSFGSQEWDAGFAVQAFLATNLIEEIGPTLAKGHDFIKKSQVKDNPLGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAESLKCCLLLSMLPPEIVGEKMEPERLYDSVNVLLSLQARLTINDDMMGSFLKFNTTSFSKKGGLAAWELAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKNLYPGHRKKEIENFIANAVRFLEDTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTYINCAAIRKAVKFLLSTQREDGGWGESYLSSPKKIYVPLEGSRSNVVHTAWALMGLIHAGQADRDPKPLHRAAKLLINSQLEEGDWPQQEITGVFMKNCMLHYPMYRDIYPMWALAEYRRRVPLPSTEV*

>Glyma08g24160.2   sequence type=predicted peptide   gene model=Glyma08g24160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLACWVEDPNGDAFKKHLARIPDYLWVSEDGMTMQSFGSQEWDAGFAVQAFLATNLIEEIGPTLAKGHDFIKKSQVKDNPLGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAESLKCCLLLSMLPPEIVGEKMEPERLYDSVNVLLSLQSKKGGLAAWELAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKNLYPGHRKKEIENFIANAVRFLEDTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTYINCAAIRKAVKFLLSTQREDGGWGESYLSSPKKIYVPLEGSRSNVVHTAWALMGLIHAGQADRDPKPLHRAAKLLINSQLEEGDWPQQEITGVFMKNCMLHYPMYRDIYPMWALAEYRRRVPLPSTEV*

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