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Report for Sequence Feature Glyma08g24110

Feature Type:gene_model
Chromosome:Gm08
Start:18317094
stop:18324522
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78915AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:29667729-29671081 REVERSE LENGTH=385 SoyBaseE_val: 2.00E-163ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
PTHR23083Panther O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT JGI ISS
PTHR23083:SF131Panther BINDING JGI ISS
UniRef100_D7KVW4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KVW4_ARALL SoyBaseE_val: 1.00E-160ISS
UniRef100_I1KVV0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVV0_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g24110 not represented in the dataset

Glyma08g24110 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g00360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g225400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g24110.1   sequence type=CDS   gene model=Glyma08g24110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTATGATGTCTATTATGCATGCAATGTCGATCAGAAGCAGCGCTTTCTTTTGCTTTCAAATAAATTGCTCCGATTCAAAGCAAGGTCGTGGTTTTGGAGAAAACACTAACAGTAACAGTAACAGTAACAGGATTAAGACCAACAAATCTGACAAGGGATCAACAACTAAACAGTCTCGCCCTCTATCTTCTCAGGCACCCCGTTTAAGTTCACAACTTGACGGCAAATCTAGGAACGACTTTTTGGATGTTGACTTTGAGGAACGGCTAAAAGCAGTTAGAAGGTCAGCACTTGAGCAGAAGAAGGCAGAGGAGGAAAAAGAATTTGGAGCAATTGACTATGGTGCACCAATTCCTTCCGACAATAAGACAATTGGCCTTGGTACTAAGATTGGAGTAGGGGTAGCTGTTGCAGTCTTCGGTCTGGTTTTTGCTTTTGGTGATTTTCTTCCATCAGGAAGTGTTAGTCCCACTGAAGACAGTGCTGTGGTCAATAGTAAGTTGTCTGAGGAGGATAAAGCTACTCTTCAGAGTAGGCTCAAGGAGTTTGAAGCAACATTAAGTAATTCCCCAAGAGATCAAATTGCTCTTGAAGGAGCTGCAGTAACTTTGGCTGAACTAGGGGAATATGCAAGAGCTTCTTCTCTACTTGATGATTTGACAAAGGAAAAACCAAATGATGCTGATGTTTTTCGTTTGCTTGGAGAAGTTAAGTACGAACTCAAAGATTATGAAGGGAGTGTTGCCGCATATAAAAGCTCAGCAAGGGTGTCCAAAGATATCCAATTTGAAGTTCTCCGTGGCCTTTCCAATTCATTACTTGCTGCCAAAAAGCAAGAGGAGGCTGTTCAATTACTTTTGGCCTATCGTGAGCATCTGAGTTCAGAAAACTTGAGCAAAAATTCTGATAGCAACCCAACAGACTCACAAAAGCTGGATCCAGTCCAAGTTGAATTACTTCTAGGGAAAGCCTACTCAGATTGGGGCCATGTCAGTGATGCTGTAACTGTTTATGATCAGCTCATATCTACTCACCCTAATGATTTTCGTGGATACTTAGCTAAGGGAATCATCCTAAAAGAAAACAAAAATATTGGTGATGCAGAAAGGATGTTCATACAAGCTAGGTTCTTTGCACCAGATAGAGCCAAAGCACTTGTGGACCGTTATTCAAGATGA

>Glyma08g24110.1   sequence type=predicted peptide   gene model=Glyma08g24110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMMSIMHAMSIRSSAFFCFQINCSDSKQGRGFGENTNSNSNSNRIKTNKSDKGSTTKQSRPLSSQAPRLSSQLDGKSRNDFLDVDFEERLKAVRRSALEQKKAEEEKEFGAIDYGAPIPSDNKTIGLGTKIGVGVAVAVFGLVFAFGDFLPSGSVSPTEDSAVVNSKLSEEDKATLQSRLKEFEATLSNSPRDQIALEGAAVTLAELGEYARASSLLDDLTKEKPNDADVFRLLGEVKYELKDYEGSVAAYKSSARVSKDIQFEVLRGLSNSLLAAKKQEEAVQLLLAYREHLSSENLSKNSDSNPTDSQKLDPVQVELLLGKAYSDWGHVSDAVTVYDQLISTHPNDFRGYLAKGIILKENKNIGDAERMFIQARFFAPDRAKALVDRYSR*







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