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Report for Sequence Feature Glyma08g24090

Feature Type:gene_model
Chromosome:Gm08
Start:18311687
stop:18312659
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g24090
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G20220AT Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family | chr3:7055060-7055416 FORWARD LENGTH=118 SoyBaseE_val: 5.00E-23ISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF02519PFAM Auxin responsive protein JGI ISS
UniRef100_F4JDJ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Legumain n=1 Tax=Arabidopsis thaliana RepID=F4JDJ3_ARATH SoyBaseE_val: 1.00E-18ISS
UniRef100_I1KVU8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVU8_SOYBN SoyBaseE_val: 4.00E-73ISS

Expression Patterns of Glyma08g24090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g24090 not represented in the dataset
Glyma08g24090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g24090 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g225200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g24090
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g24090
>Glyma08g24090.2   sequence type=CDS   gene model=Glyma08g24090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACTGGCTACCCCTAAAATAATTAGAAAGATCCCAAGCCCTCTGAAGTTGGTATCCAGAAGCTCAAGTTCAGCAGCAAAGAAGCCACTATTGGTGTCAGGATCAGGACAACCGTCGTCGTCGTCGGATGGAAGTAGCAAGCAACAGGTGGTTCCCAAAGGGTCCCTGGCTGTTTACGTGGGTCCCGACCTTCGAAGGTTTGTCATTCCAGTAAGCTTCTTGGCCATGCCAGACTTCAAGGTTTTGATGGAGTCGGTGGCAGAGGAATATGGCTGCGATCACGATGGCGCTATTCAAATCCCCTGCGATGAAGACTATTTTCAGCAAATCTTGATGTCTTGTTCCCAAAGACAACGGATCATATCCCCTAAGAAACTAATTCCTAACATCCCACTCATATGTACTACTCATTAA
Predicted protein sequences of Glyma08g24090
>Glyma08g24090.2   sequence type=predicted peptide   gene model=Glyma08g24090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLATPKIIRKIPSPLKLVSRSSSSAAKKPLLVSGSGQPSSSSDGSSKQQVVPKGSLAVYVGPDLRRFVIPVSFLAMPDFKVLMESVAEEYGCDHDGAIQIPCDEDYFQQILMSCSQRQRIISPKKLIPNIPLICTTH*






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